JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAB3_chrX_30822442_30894254	0/0	t0037	4514	1	1	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0038	4514	1	1	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0039	4511	1	0	1	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0040	4508	1	1	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0041	4511	1	0	0	1	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0042	4513	1	0	1	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0043	4516	1	0	0	1	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0044	4515	1	0	0	1	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0045	4515	1	0	1	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0046	4517	1	0	1	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0047	4511	1	0	0	1	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0048	4514	1	0	0	1	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0049	4509	1	0	0	0	0	1	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0050	4509	1	0	0	0	0	1	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0051	4509	1	0	0	0	0	1	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0052	4508	1	0	0	0	0	1	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0053	4508	1	0	0	1	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0054	4509	1	0	0	0	0	1	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0055	4509	1	1	0	0	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0056	4510	1	0	0	0	0	1	copy fasta	TAB3	chrX	30822442	30894254
TAB3_chrX_30822442_30894254	0/0	t0057	4478	1	0	0	1	0	0	copy fasta	TAB3	chrX	30822442	30894254
TAC1_chr7_97727086_97745472	1/1	t0001	672	264	47	46	133	8	28	copy fasta	TAC1	chr7	97727086	97745472
TAC1_chr7_97727086_97745472	0/0	t0002	672	78	10	9	48	2	9	copy fasta	TAC1	chr7	97727086	97745472
TAC1_chr7_97727086_97745472	0/0	t0003	672	64	24	16	17	4	3	copy fasta	TAC1	chr7	97727086	97745472
TAC1_chr7_97727086_97745472	0/0	t0004	672	12	10	1	0	0	1	copy fasta	TAC1	chr7	97727086	97745472
TAC1_chr7_97727086_97745472	0/0	t0005	672	3	0	0	3	0	0	copy fasta	TAC1	chr7	97727086	97745472
TAC1_chr7_97727086_97745472	0/0	t0006	672	3	0	0	3	0	0	copy fasta	TAC1	chr7	97727086	97745472
TAC1_chr7_97727086_97745472	0/0	t0007	672	2	2	0	0	0	0	copy fasta	TAC1	chr7	97727086	97745472
TAC1_chr7_97727086_97745472	0/0	t0008	672	1	1	0	0	0	0	copy fasta	TAC1	chr7	97727086	97745472
TAC1_chr7_97727086_97745472	0/0	t0009	672	1	0	0	0	0	1	copy fasta	TAC1	chr7	97727086	97745472
TAC3_chr12_57005000_57021529	1/1	t0001	438	275	73	65	95	9	31	copy fasta	TAC3	chr12	57005000	57021529
TAC3_chr12_57005000_57021529	0/0	t0002	438	64	14	13	27	3	7	copy fasta	TAC3	chr12	57005000	57021529
TAC3_chr12_57005000_57021529	0/0	t0003	438	5	0	0	5	0	0	copy fasta	TAC3	chr12	57005000	57021529
TAC3_chr12_57005000_57021529	0/0	t0004	438	2	2	0	0	0	0	copy fasta	TAC3	chr12	57005000	57021529
TAC3_chr12_57005000_57021529	0/0	t0005	438	1	0	0	1	0	0	copy fasta	TAC3	chr12	57005000	57021529
TAC3_chr12_57005000_57021529	0/0	t0006	438	1	1	0	0	0	0	copy fasta	TAC3	chr12	57005000	57021529
TAC4_chr17_49833300_49853069	1/1	t0001	395	379	98	79	146	16	38	copy fasta	TAC4	chr17	49833300	49853069
TAC4_chr17_49833300_49853069	0/0	t0002	395	24	0	0	24	0	0	copy fasta	TAC4	chr17	49833300	49853069
TAC4_chr17_49833300_49853069	0/0	t0003	395	1	0	1	0	0	0	copy fasta	TAC4	chr17	49833300	49853069
TAC4_chr17_49833300_49853069	0/0	t0004	395	1	0	0	1	0	0	copy fasta	TAC4	chr17	49833300	49853069
TAC4_chr17_49833300_49853069	0/0	t0005	395	1	0	0	1	0	0	copy fasta	TAC4	chr17	49833300	49853069
TACC1_chr8_38782236_38858028	1/0	t0001	5353	84	13	23	35	2	10	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0002	5350	40	1	1	25	5	8	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0003	5354	26	1	4	13	1	7	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0004	5354	23	6	4	10	1	2	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0005	5354	19	0	1	15	2	1	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0006	5352	13	1	0	12	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0007	5339	11	11	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/1	t0008	5347	10	1	5	0	1	2	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0009	5355	8	1	2	1	1	3	copy fasta	TACC1	chr8	38782236	38858028