JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TACC1_chr8_38782236_38858028	0/0	t0010	5353	7	0	0	7	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0011	5352	7	7	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0012	5351	6	0	2	4	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0013	5350	5	4	1	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0014	5349	5	5	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0015	5350	4	0	0	4	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0016	5339	4	3	1	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0017	5352	3	1	1	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0018	5352	3	2	1	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0019	5355	3	0	0	1	0	2	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0020	5353	3	3	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0021	5348	3	2	1	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0022	5352	2	0	2	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0023	5353	2	0	1	0	1	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0024	5353	2	2	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0025	5355	2	0	0	2	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0026	5353	2	0	1	0	1	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0027	5348	2	0	1	0	0	1	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0028	5347	2	0	1	0	1	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0029	5352	2	2	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0030	5351	2	2	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0031	5354	2	2	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0032	5351	1	0	1	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0033	5354	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0034	5353	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0035	5350	1	0	0	0	0	1	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0036	5352	1	0	0	0	0	1	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0037	5354	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0038	5348	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0039	5353	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0040	5353	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0041	5353	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0042	5353	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0043	5353	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0044	5348	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0045	5353	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0046	5351	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0047	5353	1	0	1	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0048	5355	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0049	5353	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0050	5350	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0051	5353	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0052	5354	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0053	5354	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0054	5353	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0055	5355	1	0	0	0	0	1	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0056	5354	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0057	5354	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0058	5350	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0059	5351	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028