JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TACC1_chr8_38782236_38858028	0/0	t0060	5352	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0061	5352	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0062	5335	1	0	1	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0063	5339	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0064	5352	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0065	5352	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0066	5347	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0067	5348	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0068	5354	1	0	0	1	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0069	5354	1	0	0	0	0	1	copy fasta	TACC1	chr8	38782236	38858028
TACC1_chr8_38782236_38858028	0/0	t0070	5353	1	1	0	0	0	0	copy fasta	TACC1	chr8	38782236	38858028
TACC2_chr10_121984163_122259542	1/1	t0001	858	130	31	18	59	3	17	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	t0002	858	64	25	16	13	5	5	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	t0003	858	43	10	9	14	1	9	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	t0004	858	30	5	10	12	1	2	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	t0005	858	21	9	3	6	0	3	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	t0006	858	11	4	5	1	0	1	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	t0007	858	3	3	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	t0008	858	1	0	0	1	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	t0009	858	1	1	0	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	t0010	858	1	0	0	0	0	1	copy fasta	TACC2	chr10	121984163	122259542
TACC2_chr10_121984163_122259542	0/0	t0011	858	1	0	1	0	0	0	copy fasta	TACC2	chr10	121984163	122259542
TACC3_chr4_1716521_1750171	0/1	t0001	282	214	35	43	97	8	30	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	1/0	t0002	282	102	41	22	31	2	5	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	t0003	282	16	2	5	0	2	7	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	t0004	282	8	7	1	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	t0005	282	3	2	1	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACC3_chr4_1716521_1750171	0/0	t0006	282	1	1	0	0	0	0	copy fasta	TACC3	chr4	1716521	1750171
TACO1_chr17_63595895_63613365	1/1	t0001	553	289	83	53	103	16	32	copy fasta	TACO1	chr17	63595895	63613365
TACO1_chr17_63595895_63613365	0/0	t0002	553	7	7	0	0	0	0	copy fasta	TACO1	chr17	63595895	63613365
TACO1_chr17_63595895_63613365	0/0	t0003	536	5	4	1	0	0	0	copy fasta	TACO1	chr17	63595895	63613365
TACO1_chr17_63595895_63613365	0/0	t0004	553	1	0	0	1	0	0	copy fasta	TACO1	chr17	63595895	63613365
TACR1_chr2_75041463_75204520	0/0	t0001	3556	90	20	19	41	1	9	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	1/0	t0002	3556	66	15	7	36	0	7	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0003	3556	50	14	9	19	1	7	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0004	3556	21	13	0	6	0	2	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0005	3556	13	9	2	1	0	1	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0006	3556	6	4	2	0	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/1	t0007	3556	6	0	1	0	4	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0008	3556	3	2	1	0	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0009	3556	3	3	0	0	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0010	3556	2	0	0	2	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0011	3556	2	2	0	0	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0012	3556	2	2	0	0	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0013	3556	2	0	0	2	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0014	3556	2	0	0	2	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0015	3556	1	1	0	0	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0016	3556	1	1	0	0	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0017	3556	1	0	0	1	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0018	3556	1	0	0	0	0	1	copy fasta	TACR1	chr2	75041463	75204520