JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TACR1_chr2_75041463_75204520	0/0	t0019	3556	1	0	0	0	0	1	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0020	3556	1	1	0	0	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0021	3556	1	0	0	1	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0022	3556	1	0	0	1	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0023	3556	1	0	0	1	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0024	3556	1	0	0	0	0	1	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0025	3556	1	1	0	0	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0026	3556	1	0	0	1	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0027	3556	1	0	0	0	0	1	copy fasta	TACR1	chr2	75041463	75204520
TACR1_chr2_75041463_75204520	0/0	t0028	3556	1	0	1	0	0	0	copy fasta	TACR1	chr2	75041463	75204520
TACR2_chr10_69398903_69421918	1/1	t0001	1519	172	17	34	101	5	13	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0002	1519	48	18	10	3	3	14	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0003	1519	35	1	8	14	4	8	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0004	1519	35	2	12	15	5	1	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0005	1519	14	1	6	6	0	1	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0006	1519	10	1	0	7	0	2	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0007	1519	8	8	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0008	1519	6	6	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0009	1519	6	6	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0010	1519	5	4	1	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0011	1519	5	5	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0012	1519	4	3	1	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0013	1519	3	2	1	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0014	1519	3	0	2	0	1	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0015	1519	3	3	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0016	1519	2	0	0	0	0	2	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0017	1519	2	1	0	1	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0018	1519	2	0	0	2	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0019	1519	2	0	0	2	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0020	1519	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0021	1519	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0022	1519	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0023	1519	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0024	1519	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0025	1519	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0026	1519	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0027	1519	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0028	1519	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0029	1519	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0030	1519	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0031	1519	1	0	0	1	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0032	1519	1	0	1	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0033	1519	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0034	1519	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0035	1519	1	1	0	0	0	0	copy fasta	TACR2	chr10	69398903	69421918
TACR2_chr10_69398903_69421918	0/0	t0036	1519	1	0	0	0	0	1	copy fasta	TACR2	chr10	69398903	69421918
TACR3_chr4_103581031_103724985	0/0	t0001	3962	63	1	18	33	3	8	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0002	3962	54	2	6	35	0	11	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0003	3962	24	0	2	17	1	4	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	1/0	t0004	3962	15	8	3	0	1	2	copy fasta	TACR3	chr4	103581031	103724985