JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TACR3_chr4_103581031_103724985	0/0	t0005	3962	14	0	2	9	3	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0006	3966	11	10	1	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0007	3962	9	8	0	0	0	1	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0008	3962	8	7	1	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0009	3957	8	8	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0010	3968	5	5	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0011	3962	5	5	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/1	t0012	3962	4	0	1	0	1	1	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0013	3961	4	4	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0014	3964	4	3	1	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0015	3958	4	4	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0016	3962	3	3	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0017	3958	3	3	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0018	3961	3	3	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0019	3966	2	2	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0020	3961	2	2	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0021	3962	2	2	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0022	3962	2	0	0	2	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0023	3962	2	2	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0024	3962	2	2	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0025	3962	2	0	2	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0026	3968	2	2	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0027	3962	1	0	0	0	0	1	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0028	3961	1	1	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0029	3964	1	1	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0030	3962	1	0	0	1	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0031	3961	1	1	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0032	3962	1	0	0	1	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0033	3968	1	1	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0034	3964	1	0	0	0	1	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0035	3962	1	0	0	1	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0036	3962	1	0	0	1	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0037	3962	1	0	0	1	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0038	3962	1	0	1	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0039	3966	1	0	0	0	0	1	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0040	3962	1	0	1	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0041	3962	1	0	0	0	0	1	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0042	3968	1	1	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0043	3966	1	1	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0044	3344	1	1	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0045	3964	1	1	0	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0046	3962	1	0	0	1	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0047	3962	1	0	0	1	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0048	3962	1	0	1	0	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACR3_chr4_103581031_103724985	0/0	t0049	3962	1	0	0	1	0	0	copy fasta	TACR3	chr4	103581031	103724985
TACSTD2_chr1_58570433_58582252	1/1	t0001	849	251	15	50	153	8	23	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0002	849	69	25	7	31	0	6	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0003	849	30	5	6	10	4	5	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0004	849	19	15	3	0	0	1	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0005	849	17	5	6	0	1	5	copy fasta	TACSTD2	chr1	58570433	58582252