JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TACSTD2_chr1_58570433_58582252	0/0	t0006	849	14	10	4	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0007	849	8	5	3	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0008	849	5	5	0	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0009	849	3	0	1	0	2	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0010	849	2	2	0	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0011	849	2	0	0	0	0	2	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0012	849	1	0	0	1	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0013	849	1	0	1	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0014	849	1	1	0	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0015	849	1	0	0	0	0	1	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0016	849	1	0	0	0	1	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0017	849	1	0	0	1	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0018	849	1	0	1	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0019	849	1	0	0	0	0	1	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0020	849	1	1	0	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TACSTD2_chr1_58570433_58582252	0/0	t0021	849	1	1	0	0	0	0	copy fasta	TACSTD2	chr1	58570433	58582252
TADA1_chr1_166851510_166881264	1/0	t0001	1089	151	30	37	61	8	14	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/1	t0002	1089	149	28	28	72	6	14	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	t0003	1098	68	2	4	50	1	11	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	t0004	1089	27	26	1	0	0	0	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	t0005	1089	8	5	3	0	0	0	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	t0006	1089	5	1	0	0	0	4	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	t0007	1087	3	3	0	0	0	0	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	t0008	1089	1	0	0	1	0	0	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	t0009	1089	1	0	0	1	0	0	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	t0010	1087	1	1	0	0	0	0	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	t0011	1089	1	0	0	0	1	0	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	t0012	1089	1	0	0	0	0	1	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	t0013	1089	1	0	0	1	0	0	copy fasta	TADA1	chr1	166851510	166881264
TADA1_chr1_166851510_166881264	0/0	t0014	1089	1	0	1	0	0	0	copy fasta	TADA1	chr1	166851510	166881264
TADA2A_chr17_37401886_37484725	0/1	t0001	2906	128	27	13	73	2	12	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0002	2905	46	0	6	28	2	10	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0003	2907	45	2	6	28	3	6	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0004	2905	41	5	12	11	2	11	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0005	2905	14	1	11	1	0	1	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0006	2906	10	10	0	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0007	2905	10	5	5	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0008	2905	9	0	2	5	1	1	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0009	2906	8	2	5	0	1	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0010	2905	8	7	1	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0011	2905	5	1	0	4	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0012	2906	4	0	0	4	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0013	2906	3	3	0	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0014	2900	3	0	0	0	2	1	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0015	2906	2	0	0	1	1	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0016	2906	2	0	0	2	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0017	2906	1	1	0	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0018	2906	1	0	1	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0019	2905	1	1	0	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0020	2906	1	0	1	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725