JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TADA2A_chr17_37401886_37484725	0/0	t0021	2906	1	1	0	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0022	2906	1	1	0	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0023	2906	1	1	0	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0024	2906	1	1	0	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0025	2905	1	0	1	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0026	2905	1	1	0	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0027	2906	1	0	0	1	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0028	2906	1	1	0	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2A_chr17_37401886_37484725	0/0	t0029	2906	1	1	0	0	0	0	copy fasta	TADA2A	chr17	37401886	37484725
TADA2B_chr4_7038372_7062952	0/1	t0001	3110	197	25	32	105	4	30	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0002	3111	88	21	13	50	4	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0003	3110	31	2	14	6	6	3	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	1/0	t0004	3107	16	15	0	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0005	3110	13	0	4	4	1	4	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0006	3111	10	2	5	0	1	2	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0007	3110	7	6	0	0	0	1	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0008	3107	6	6	0	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0009	3110	4	4	0	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0010	3107	4	4	0	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0011	3111	4	0	0	4	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0012	3110	3	1	2	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0013	3110	3	0	1	0	0	2	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0014	3110	3	0	0	3	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0015	3107	3	3	0	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0016	3115	3	0	0	3	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0017	3107	3	2	1	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0018	3111	2	0	0	0	0	2	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0019	3111	2	1	1	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0020	3110	1	0	0	1	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0021	3110	1	0	0	1	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0022	3110	1	0	1	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0023	3111	1	0	1	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0024	3110	1	0	0	1	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0025	3106	1	0	0	1	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0026	3110	1	0	0	0	0	1	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0027	3111	1	0	0	0	0	1	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0028	3110	1	1	0	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0029	3107	1	1	0	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0030	3107	1	1	0	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0031	3110	1	1	0	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0032	3111	1	0	1	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0033	3111	1	0	0	0	0	1	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0034	3111	1	0	0	1	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0035	3107	1	1	0	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0036	3111	1	1	0	0	0	0	copy fasta	TADA2B	chr4	7038372	7062952
TADA2B_chr4_7038372_7062952	0/0	t0037	3110	1	0	0	0	0	1	copy fasta	TADA2B	chr4	7038372	7062952
TADA3_chr3_9774967_9797473	1/0	t0001	676	213	45	46	91	10	20	copy fasta	TADA3	chr3	9774967	9797473
TADA3_chr3_9774967_9797473	0/1	t0002	676	130	16	16	80	4	13	copy fasta	TADA3	chr3	9774967	9797473
TADA3_chr3_9774967_9797473	0/0	t0003	676	55	23	8	13	4	7	copy fasta	TADA3	chr3	9774967	9797473
TADA3_chr3_9774967_9797473	0/0	t0004	676	9	9	0	0	0	0	copy fasta	TADA3	chr3	9774967	9797473