Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BNIP3L_chr8_26378054_26418127	0/0	t0021	2793	1	1	0	0	0	0	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0022	2793	1	1	0	0	0	0	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0023	2793	1	0	1	0	0	0	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0024	2793	1	0	0	1	0	0	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3L_chr8_26378054_26418127	0/0	t0025	2793	1	0	0	0	0	1	copy fasta	BNIP3L	chr8	26378054	26418127
BNIP3_chr10_131962684_131986923	1/0	t0001	958	228	44	40	107	10	26	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	t0002	958	104	10	11	70	1	12	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/1	t0003	958	69	24	15	19	5	5	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	t0004	958	10	9	1	0	0	0	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	t0005	958	9	3	3	1	0	2	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	t0006	958	7	0	0	7	0	0	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	t0007	958	3	3	0	0	0	0	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	t0008	958	2	0	2	0	0	0	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	t0009	958	1	1	0	0	0	0	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	t0010	958	1	0	0	1	0	0	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	t0011	958	1	0	0	0	0	1	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	t0012	958	1	1	0	0	0	0	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	t0013	958	1	1	0	0	0	0	copy fasta	BNIP3	chr10	131962684	131986923
BNIP3_chr10_131962684_131986923	0/0	t0014	958	1	0	0	1	0	0	copy fasta	BNIP3	chr10	131962684	131986923
BNIP5_chr6_36310761_36341888	1/1	t0001	1777	307	64	47	137	13	44	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	t0002	1777	88	14	23	46	2	3	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	t0003	1777	9	9	0	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	t0004	1777	8	8	0	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	t0005	1777	2	0	1	0	1	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	t0006	1777	2	0	2	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	t0007	1777	1	1	0	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	t0008	1777	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	t0009	1777	1	0	0	0	0	1	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	t0010	1777	1	1	0	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	t0011	1777	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	t0012	1777	1	1	0	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	t0013	1761	1	0	0	1	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIP5_chr6_36310761_36341888	0/0	t0014	1777	1	0	1	0	0	0	copy fasta	BNIP5	chr6	36310761	36341888
BNIPL_chr1_151031586_151052720	0/1	t0001	1174	253	52	50	107	8	35	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	1/0	t0002	1174	66	19	11	24	7	4	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	t0003	1174	21	13	1	2	1	4	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	t0004	1174	6	6	0	0	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	t0005	1174	5	4	1	0	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	t0006	1174	3	0	1	0	2	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	t0007	1174	2	2	0	0	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	t0008	1174	2	0	0	2	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	t0009	1174	1	1	0	0	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	t0010	1174	1	1	0	0	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	t0011	1174	1	0	0	0	0	1	copy fasta	BNIPL	chr1	151031586	151052720
BNIPL_chr1_151031586_151052720	0/0	t0012	1213	1	0	0	1	0	0	copy fasta	BNIPL	chr1	151031586	151052720
BOC_chr3_113206557_113292459	1/0	t0001	1227	90	22	19	27	8	13	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	t0002	1228	78	2	18	48	1	9	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	t0003	1227	23	3	8	7	0	5	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	t0004	1226	15	0	0	13	0	2	copy fasta	BOC	chr3	113206557	113292459
BOC_chr3_113206557_113292459	0/0	t0005	1227	13	8	2	3	0	0	copy fasta	BOC	chr3	113206557	113292459