JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TADA3_chr3_9774967_9797473	0/0	t0005	676	1	1	0	0	0	0	copy fasta	TADA3	chr3	9774967	9797473
TADA3_chr3_9774967_9797473	0/0	t0006	676	1	0	0	1	0	0	copy fasta	TADA3	chr3	9774967	9797473
TADA3_chr3_9774967_9797473	0/0	t0007	676	1	0	0	1	0	0	copy fasta	TADA3	chr3	9774967	9797473
TAF10_chr11_6601294_6617216	1/1	t0001	4656	206	25	47	101	7	24	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0002	4656	131	32	18	68	1	12	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0003	4652	43	2	13	21	3	4	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0004	4656	10	0	5	0	3	2	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0005	4652	5	4	1	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0006	4652	5	5	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0007	4652	5	5	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0008	4656	4	0	0	4	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0009	4656	4	4	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0010	4656	2	2	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0011	4656	2	2	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0012	4656	2	0	0	0	0	2	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0013	4652	2	2	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0014	4652	2	0	0	2	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0015	4652	2	2	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0016	4656	2	2	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0017	4656	1	1	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0018	4656	1	0	0	1	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0019	4652	1	0	0	1	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0020	4652	1	0	0	0	0	1	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0021	4656	1	1	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0022	4652	1	0	0	0	0	1	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0023	4652	1	1	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0024	4656	1	0	1	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0025	4656	1	0	1	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0026	4656	1	1	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0027	4656	1	0	0	1	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0028	4656	1	0	0	1	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0029	4652	1	1	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0030	4656	1	1	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0031	4656	1	0	0	0	1	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0032	4656	1	1	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0033	4656	1	1	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0034	4656	1	1	0	0	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0035	4656	1	0	0	1	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0036	4656	1	0	0	1	0	0	copy fasta	TAF10	chr11	6601294	6617216
TAF10_chr11_6601294_6617216	0/0	t0037	4656	1	0	0	0	1	0	copy fasta	TAF10	chr11	6601294	6617216
TAF11_chr6_34872462_34893042	1/0	t0001	1214	160	8	42	79	11	19	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/1	t0002	1214	111	42	12	48	1	7	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	t0003	1216	74	9	6	53	1	5	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	t0004	1214	53	18	10	20	1	4	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	t0005	1214	9	0	6	0	0	3	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	t0006	1219	7	7	0	0	0	0	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	t0007	1214	4	0	0	4	0	0	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	t0008	1214	3	3	0	0	0	0	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	t0009	1214	1	1	0	0	0	0	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	t0010	1214	1	0	0	1	0	0	copy fasta	TAF11	chr6	34872462	34893042