JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAF11_chr6_34872462_34893042	0/0	t0011	1216	1	0	0	1	0	0	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	t0012	1214	1	1	0	0	0	0	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	t0013	1214	1	0	0	1	0	0	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	t0014	1214	1	1	0	0	0	0	copy fasta	TAF11	chr6	34872462	34893042
TAF11_chr6_34872462_34893042	0/0	t0015	1214	1	0	0	1	0	0	copy fasta	TAF11	chr6	34872462	34893042
TAF12_chr1_28597850_28648067	1/1	t0001	850	292	75	63	96	16	40	copy fasta	TAF12	chr1	28597850	28648067
TAF12_chr1_28597850_28648067	0/0	t0002	848	8	6	2	0	0	0	copy fasta	TAF12	chr1	28597850	28648067
TAF12_chr1_28597850_28648067	0/0	t0003	850	1	0	1	0	0	0	copy fasta	TAF12	chr1	28597850	28648067
TAF12_chr1_28597850_28648067	0/0	t0004	850	1	1	0	0	0	0	copy fasta	TAF12	chr1	28597850	28648067
TAF13_chr1_109059140_109081003	0/0	t0001	443	181	21	38	89	7	26	copy fasta	TAF13	chr1	109059140	109081003
TAF13_chr1_109059140_109081003	0/1	t0002	444	114	20	17	63	4	9	copy fasta	TAF13	chr1	109059140	109081003
TAF13_chr1_109059140_109081003	0/0	t0003	445	38	7	4	24	0	3	copy fasta	TAF13	chr1	109059140	109081003
TAF13_chr1_109059140_109081003	0/0	t0004	442	21	15	4	1	1	0	copy fasta	TAF13	chr1	109059140	109081003
TAF13_chr1_109059140_109081003	1/0	t0005	440	14	13	0	0	0	0	copy fasta	TAF13	chr1	109059140	109081003
TAF13_chr1_109059140_109081003	0/0	t0006	446	13	6	1	3	0	3	copy fasta	TAF13	chr1	109059140	109081003
TAF13_chr1_109059140_109081003	0/0	t0007	441	9	7	0	0	1	1	copy fasta	TAF13	chr1	109059140	109081003
TAF13_chr1_109059140_109081003	0/0	t0008	440	8	4	3	0	0	1	copy fasta	TAF13	chr1	109059140	109081003
TAF13_chr1_109059140_109081003	0/0	t0009	430	5	1	1	0	0	3	copy fasta	TAF13	chr1	109059140	109081003
TAF13_chr1_109059140_109081003	0/0	t0010	444	3	1	2	0	0	0	copy fasta	TAF13	chr1	109059140	109081003
TAF13_chr1_109059140_109081003	0/0	t0011	445	3	0	3	0	0	0	copy fasta	TAF13	chr1	109059140	109081003
TAF13_chr1_109059140_109081003	0/0	t0012	441	2	2	0	0	0	0	copy fasta	TAF13	chr1	109059140	109081003
TAF13_chr1_109059140_109081003	0/0	t0013	442	1	0	1	0	0	0	copy fasta	TAF13	chr1	109059140	109081003
TAF13_chr1_109059140_109081003	0/0	t0014	420	1	1	0	0	0	0	copy fasta	TAF13	chr1	109059140	109081003
TAF13_chr1_109059140_109081003	0/0	t0015	444	1	0	0	0	1	0	copy fasta	TAF13	chr1	109059140	109081003
TAF15_chr17_35804484_35852242	0/1	t0001	384	320	76	68	138	9	28	copy fasta	TAF15	chr17	35804484	35852242
TAF15_chr17_35804484_35852242	0/0	t0002	384	1	0	0	0	1	0	copy fasta	TAF15	chr17	35804484	35852242
TAF1A_chr1_222553312_222594933	0/1	t0001	558	232	35	36	134	5	21	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	t0002	558	80	40	9	26	4	1	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	t0003	558	69	23	12	17	3	14	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	t0004	558	1	0	1	0	0	0	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	0/0	t0005	558	1	0	0	1	0	0	copy fasta	TAF1A	chr1	222553312	222594933
TAF1A_chr1_222553312_222594933	1/0	t0006	558	1	0	0	0	0	0	copy fasta	TAF1A	chr1	222553312	222594933
TAF1B_chr2_9838474_9939416	1/1	t0001	501	284	88	46	106	13	29	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	t0002	501	76	2	16	51	1	6	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	t0003	501	5	4	1	0	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	t0004	501	4	0	0	4	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	t0005	501	3	0	3	0	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	t0006	501	1	0	0	1	0	0	copy fasta	TAF1B	chr2	9838474	9939416
TAF1B_chr2_9838474_9939416	0/0	t0007	501	1	0	0	0	0	1	copy fasta	TAF1B	chr2	9838474	9939416
TAF1C_chr16_84172855_84192057	1/1	t0001	1316	135	32	36	49	3	13	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0002	1316	78	0	13	59	0	6	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0003	1316	56	6	16	21	5	8	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0004	1316	39	12	2	19	0	6	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0005	1316	21	4	1	8	3	5	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0006	1316	20	0	0	16	2	2	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0007	1316	15	0	2	11	1	1	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0008	1316	14	1	2	11	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0009	1316	13	13	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0010	1316	6	5	1	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0011	1316	6	0	3	2	0	1	copy fasta	TAF1C	chr16	84172855	84192057