JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAF1C_chr16_84172855_84192057	0/0	t0012	1316	5	0	1	3	1	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0013	1316	5	2	2	0	1	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0014	1316	4	0	1	0	0	3	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0015	1316	4	0	0	4	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0016	1316	4	4	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0017	1316	3	0	0	1	0	2	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0018	1316	3	1	1	1	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0019	1316	3	0	0	3	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0020	1316	2	2	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0021	1316	2	1	1	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0022	1316	2	2	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0023	1316	2	0	0	2	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0024	1316	2	0	0	1	0	1	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0025	1316	2	2	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0026	1316	2	2	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0027	1316	2	2	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0028	1316	2	0	2	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0029	1316	2	0	0	2	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0030	1316	2	2	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0031	1316	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0032	1316	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0033	1316	1	0	0	1	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0034	1316	1	0	1	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0035	1316	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0036	1316	1	0	0	1	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0037	1316	1	0	1	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0038	1316	1	0	0	1	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0039	1316	1	0	1	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0040	1316	1	0	1	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0041	1316	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0042	1316	1	0	0	1	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0043	1316	1	0	0	1	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0044	1316	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0045	1316	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0046	1316	1	0	0	0	0	1	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0047	1316	1	0	0	0	0	1	copy fasta	TAF1C	chr16	84172855	84192057
TAF1C_chr16_84172855_84192057	0/0	t0048	1316	1	1	0	0	0	0	copy fasta	TAF1C	chr16	84172855	84192057
TAF1D_chr11_93730567_93746495	0/1	t0001	802	354	51	62	176	18	46	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	1/0	t0002	796	44	32	6	4	0	1	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	t0003	802	15	0	0	15	0	0	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	t0004	796	4	4	0	0	0	0	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	t0005	794	4	4	0	0	0	0	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	t0006	796	2	2	0	0	0	0	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	t0007	802	2	2	0	0	0	0	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	t0008	802	1	1	0	0	0	0	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	t0009	802	1	0	0	0	0	1	copy fasta	TAF1D	chr11	93730567	93746495
TAF1D_chr11_93730567_93746495	0/0	t0010	802	1	0	0	1	0	0	copy fasta	TAF1D	chr11	93730567	93746495
TAF1L_chr9_32624454_32640669	1/1	t0001	736	278	72	59	110	11	24	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	t0002	736	56	1	5	47	0	3	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	t0003	736	7	7	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669