JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAF1L_chr9_32624454_32640669	0/0	t0004	736	4	4	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	t0005	736	3	3	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	t0006	736	3	0	2	0	1	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	t0007	736	3	0	0	2	0	1	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	t0008	736	1	0	0	1	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	t0009	736	1	0	0	1	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	t0010	725	1	0	0	1	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1L_chr9_32624454_32640669	0/0	t0011	736	1	1	0	0	0	0	copy fasta	TAF1L	chr9	32624454	32640669
TAF1_chrX_71361357_71471005	1/1	t0001	1978	176	56	29	68	3	18	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	t0002	1978	6	4	2	0	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	t0003	1978	4	0	4	0	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	t0004	1978	4	0	2	0	0	2	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	t0005	1977	4	0	0	2	2	0	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	t0006	1979	2	0	0	2	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	t0007	1978	1	0	0	1	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	t0008	1978	1	1	0	0	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	t0009	1978	1	0	0	1	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF1_chrX_71361357_71471005	0/0	t0010	1978	1	1	0	0	0	0	copy fasta	TAF1	chrX	71361357	71471005
TAF2_chr8_119725774_119837841	1/0	t0001	1428	264	55	41	120	12	35	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	t0002	1428	24	18	6	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/1	t0003	1428	23	11	4	2	2	3	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	t0004	1428	3	2	1	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	t0005	1428	2	2	0	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	t0006	1428	2	0	0	2	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	t0007	1428	2	0	2	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	t0008	1428	1	1	0	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF2_chr8_119725774_119837841	0/0	t0009	1428	1	1	0	0	0	0	copy fasta	TAF2	chr8	119725774	119837841
TAF3_chr10_7813505_8021631	1/1	t0001	2086	302	65	63	121	12	39	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	t0002	2085	14	6	2	6	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	t0003	2087	14	0	0	14	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	t0004	2086	7	6	1	0	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	t0005	2086	3	3	0	0	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	t0006	2086	2	0	0	0	2	0	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	t0007	2086	1	0	0	0	0	1	copy fasta	TAF3	chr10	7813505	8021631
TAF3_chr10_7813505_8021631	0/0	t0008	2086	1	0	0	1	0	0	copy fasta	TAF3	chr10	7813505	8021631
TAF4B_chr18_26221445_26396685	0/0	t0001	2163	69	6	16	38	1	8	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	1/0	t0002	2163	41	11	10	10	2	7	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0003	2159	32	1	12	16	0	3	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0004	2162	21	20	1	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0005	2164	12	4	4	2	1	1	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0006	2162	12	0	0	12	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0007	2164	9	9	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0008	2164	7	0	2	2	2	1	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0009	2163	7	1	4	0	2	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0010	2158	7	5	2	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/1	t0011	2163	6	0	2	1	1	1	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0012	2163	6	6	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0013	2163	5	3	2	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0014	2162	3	1	0	1	0	1	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0015	2163	3	1	1	0	0	1	copy fasta	TAF4B	chr18	26221445	26396685