JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAF4B_chr18_26221445_26396685	0/0	t0016	2163	3	3	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0017	2164	3	3	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0018	2163	2	2	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0019	2163	2	2	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0020	2164	2	0	0	0	1	1	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0021	2163	2	0	2	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0022	2162	2	0	0	1	0	1	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0023	2159	2	0	2	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0024	2162	2	0	0	0	0	2	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0025	2159	2	2	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0026	2163	1	0	0	0	0	1	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0027	2163	1	0	0	1	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0028	2163	1	0	1	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0029	2163	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0030	2163	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0031	2164	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0032	2164	1	0	1	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0033	2163	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0034	2163	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0035	2163	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0036	2157	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4B_chr18_26221445_26396685	0/0	t0037	2162	1	1	0	0	0	0	copy fasta	TAF4B	chr18	26221445	26396685
TAF4_chr20_61969798_62070881	1/1	t0001	1442	298	74	63	110	14	35	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	t0002	1442	4	0	2	0	2	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	t0003	1442	2	0	0	2	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	t0004	1442	2	0	2	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	t0005	1442	2	2	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	t0006	1442	1	0	0	0	0	1	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	t0007	1442	1	0	1	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	t0008	1442	1	1	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	t0009	1442	1	0	0	1	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	t0010	1442	1	1	0	0	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF4_chr20_61969798_62070881	0/0	t0011	1442	1	0	0	1	0	0	copy fasta	TAF4	chr20	61969798	62070881
TAF5L_chr1_229588134_229631122	1/1	t0001	1405	330	68	58	151	12	39	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	t0002	1405	14	1	4	1	2	6	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	t0003	1405	11	10	1	0	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	t0004	1405	5	4	1	0	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	t0005	1405	4	4	0	0	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	t0006	1405	3	0	0	2	0	1	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	t0007	1405	2	2	0	0	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	t0008	1405	2	0	2	0	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	t0009	1405	1	0	1	0	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	t0010	1417	1	0	0	1	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	t0011	1405	1	0	1	0	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	t0012	1405	1	1	0	0	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5L_chr1_229588134_229631122	0/0	t0013	1405	1	0	0	1	0	0	copy fasta	TAF5L	chr1	229588134	229631122
TAF5_chr10_103362976_103394065	1/1	t0001	857	375	90	72	169	14	28	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	t0002	857	16	0	0	16	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	t0003	857	4	4	0	0	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	t0004	857	1	0	0	1	0	0	copy fasta	TAF5	chr10	103362976	103394065