JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAF5_chr10_103362976_103394065	0/0	t0005	857	1	0	0	1	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	t0006	857	1	0	0	1	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	t0007	857	1	0	0	1	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF5_chr10_103362976_103394065	0/0	t0008	857	1	0	0	1	0	0	copy fasta	TAF5	chr10	103362976	103394065
TAF6L_chr11_62766396_62792342	1/1	t0001	155	285	61	55	119	14	34	copy fasta	TAF6L	chr11	62766396	62792342
TAF6L_chr11_62766396_62792342	0/0	t0002	155	63	22	7	30	2	2	copy fasta	TAF6L	chr11	62766396	62792342
TAF6L_chr11_62766396_62792342	0/0	t0003	155	1	1	0	0	0	0	copy fasta	TAF6L	chr11	62766396	62792342
TAF6L_chr11_62766396_62792342	0/0	t0004	155	1	0	0	1	0	0	copy fasta	TAF6L	chr11	62766396	62792342
TAF6_chr7_100102070_100124358	0/0	t0001	391	254	27	38	149	8	32	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	1/1	t0002	391	117	38	27	28	8	14	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	t0003	391	12	12	0	0	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	t0004	390	9	8	1	0	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	t0005	391	3	0	0	3	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	t0006	391	3	3	0	0	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	t0007	391	2	1	0	0	0	1	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	t0008	391	1	0	0	1	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	t0009	391	1	0	0	1	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	t0010	391	1	0	0	1	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	t0011	391	1	0	0	1	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	t0012	391	1	1	0	0	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	t0013	391	1	1	0	0	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	t0014	391	1	0	0	0	0	1	copy fasta	TAF6	chr7	100102070	100124358
TAF6_chr7_100102070_100124358	0/0	t0015	391	1	1	0	0	0	0	copy fasta	TAF6	chr7	100102070	100124358
TAF7L_chrX_101263257_101296334	1/1	t0001	1050	273	66	50	116	12	27	copy fasta	TAF7L	chrX	101263257	101296334
TAF7L_chrX_101263257_101296334	0/0	t0002	1048	9	8	0	0	1	0	copy fasta	TAF7L	chrX	101263257	101296334
TAF7L_chrX_101263257_101296334	0/0	t0003	1050	1	0	0	1	0	0	copy fasta	TAF7L	chrX	101263257	101296334
TAF7L_chrX_101263257_101296334	0/0	t0004	1050	1	0	0	0	0	1	copy fasta	TAF7L	chrX	101263257	101296334
TAF7L_chrX_101263257_101296334	0/0	t0005	1050	1	0	1	0	0	0	copy fasta	TAF7L	chrX	101263257	101296334
TAF7_chr5_141313490_141325784	0/0	t0001	1246	270	60	55	128	10	17	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0002	1246	55	13	10	24	2	6	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/1	t0003	1246	31	13	7	4	2	4	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0004	1246	25	8	1	16	0	0	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0005	1246	13	2	5	0	2	4	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0006	1246	6	0	4	2	0	0	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0007	1246	4	0	0	3	0	1	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0008	1246	3	0	1	0	0	2	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0009	1246	2	0	0	0	0	2	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0010	1246	2	0	0	2	0	0	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0011	1246	1	1	0	0	0	0	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0012	1246	1	0	0	1	0	0	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	1/0	t0013	1246	1	0	0	0	0	0	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0014	1246	1	0	0	1	0	0	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0015	1246	1	0	1	0	0	0	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0016	1246	1	0	0	1	0	0	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0017	1246	1	0	0	1	0	0	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0018	1246	1	0	0	1	0	0	copy fasta	TAF7	chr5	141313490	141325784
TAF7_chr5_141313490_141325784	0/0	t0019	1246	1	1	0	0	0	0	copy fasta	TAF7	chr5	141313490	141325784
TAF8_chr6_42045524_42088272	0/0	t0001	5742	118	2	32	60	10	14	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0002	5751	43	0	13	27	0	3	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0003	5752	41	1	1	36	0	3	copy fasta	TAF8	chr6	42045524	42088272