JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAF8_chr6_42045524_42088272	0/0	t0004	5745	35	5	11	11	4	4	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0005	5751	23	4	1	18	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0006	5751	19	3	6	3	2	5	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0007	5750	12	12	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0008	5742	10	1	3	6	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0009	5751	9	0	0	8	1	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/1	t0010	5748	8	3	1	1	0	2	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0011	5750	7	6	1	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0012	5751	6	6	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0013	5743	6	6	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0014	5746	6	6	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0015	5745	6	0	0	6	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0016	5742	5	5	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0017	5744	5	0	0	4	0	1	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0018	5744	5	0	0	5	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0019	5743	4	4	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0020	5736	4	0	0	4	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0021	5751	4	3	1	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0022	5741	3	0	0	3	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0023	5750	3	3	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0024	5752	3	3	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0025	5742	3	0	2	0	0	1	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0026	5744	3	0	1	0	1	1	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0027	5742	2	2	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0028	5744	2	0	0	2	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0029	5742	2	0	0	0	0	2	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0030	5744	2	2	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0031	5746	2	0	0	2	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0032	5743	2	0	1	0	0	1	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0033	5748	2	1	1	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0034	5751	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0035	5752	1	0	0	0	0	1	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0036	5752	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0037	5750	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0038	5751	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0039	5752	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0040	5743	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0041	5743	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0042	5750	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0043	5743	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0044	5745	1	0	0	0	0	1	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0045	5745	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0046	5742	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0047	5741	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0048	5750	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0049	5750	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0050	5749	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0051	5751	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0052	5746	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0053	5747	1	0	0	0	0	1	copy fasta	TAF8	chr6	42045524	42088272