JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAF8_chr6_42045524_42088272	0/0	t0054	5750	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0055	5742	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0056	5736	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0057	5742	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0058	5742	1	0	1	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0059	5748	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0060	5742	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0061	5752	1	0	1	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0062	5751	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0063	5794	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0064	5747	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0065	5751	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0066	5751	1	0	0	0	0	1	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0067	5747	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0068	5741	1	0	1	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0069	5749	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	1/0	t0070	5746	1	0	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0071	5748	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0072	5750	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0073	5745	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0074	5745	1	0	0	0	0	1	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0075	5744	1	0	0	0	0	1	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0076	5745	1	0	1	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0077	5746	1	0	0	0	0	1	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0078	5745	1	0	0	1	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0079	5743	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0080	5748	1	0	1	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0081	5748	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF8_chr6_42045524_42088272	0/0	t0082	5748	1	1	0	0	0	0	copy fasta	TAF8	chr6	42045524	42088272
TAF9B_chrX_78124748_78144650	1/1	t0001	1902	163	40	27	71	5	18	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	t0002	1904	133	25	20	73	3	12	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	t0003	1903	8	6	0	2	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	t0004	1905	3	1	0	2	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	t0005	1902	1	1	0	0	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	t0006	1896	1	0	0	0	1	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	t0007	1902	1	1	0	0	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	t0008	1902	1	0	0	0	0	1	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	t0009	1898	1	1	0	0	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	t0010	1903	1	1	0	0	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	t0011	1903	1	0	1	0	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	t0012	1904	1	0	0	1	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	t0013	1907	1	0	0	1	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	t0014	1901	1	0	0	1	0	0	copy fasta	TAF9B	chrX	78124748	78144650
TAF9B_chrX_78124748_78144650	0/0	t0015	1902	1	0	0	0	0	1	copy fasta	TAF9B	chrX	78124748	78144650
TAF9_chr5_69359743_69374520	0/1	t0001	369	439	95	79	206	14	44	copy fasta	TAF9	chr5	69359743	69374520
TAF9_chr5_69359743_69374520	0/0	t0002	369	1	0	1	0	0	0	copy fasta	TAF9	chr5	69359743	69374520
TAF9_chr5_69359743_69374520	0/0	t0003	369	1	1	0	0	0	0	copy fasta	TAF9	chr5	69359743	69374520
TAFA1_chr3_67999247_68550621	0/0	t0001	1575	61	20	17	15	1	8	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0002	1578	32	11	7	11	0	3	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0003	1575	11	0	2	2	1	6	copy fasta	TAFA1	chr3	67999247	68550621