JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAFA1_chr3_67999247_68550621	0/0	t0004	1575	9	9	0	0	0	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0005	1578	8	1	0	6	0	1	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0006	1575	7	0	1	4	0	2	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0007	1578	5	1	2	0	2	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0008	1578	3	3	0	0	0	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0009	1578	3	3	0	0	0	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0010	1575	2	2	0	0	0	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0011	1575	2	0	1	0	0	1	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0012	1578	2	2	0	0	0	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0013	1575	1	0	1	0	0	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0014	1575	1	0	0	0	0	1	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0015	1575	1	1	0	0	0	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0016	1578	1	1	0	0	0	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0017	1580	1	1	0	0	0	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0018	1580	1	0	1	0	0	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0019	1578	1	1	0	0	0	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0020	1578	1	1	0	0	0	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0021	1578	1	1	0	0	0	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0022	1575	1	1	0	0	0	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA1_chr3_67999247_68550621	0/0	t0023	1578	1	1	0	0	0	0	copy fasta	TAFA1	chr3	67999247	68550621
TAFA2_chr12_61703273_62197773	0/0	t0001	3650	61	9	11	28	4	9	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0002	3649	54	11	16	22	2	3	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0003	3649	27	3	7	12	2	3	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0004	3649	8	8	0	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0005	3649	8	6	1	1	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0006	3649	6	6	0	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0007	3649	6	6	0	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0008	3650	6	1	2	1	0	2	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0009	3649	5	5	0	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0010	3649	5	4	1	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0011	3650	4	0	2	0	0	2	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0012	3649	3	1	2	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0013	3649	3	2	1	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0014	3649	2	0	1	0	0	1	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0015	3650	2	0	1	1	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0016	3649	2	2	0	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0017	3649	2	2	0	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0018	3649	2	2	0	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0019	3649	1	0	1	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0020	3649	1	0	1	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0021	3649	1	0	0	1	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0022	3649	1	1	0	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0023	3649	1	0	1	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0024	3649	1	1	0	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0025	3649	1	1	0	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0026	3649	1	0	0	1	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0027	3649	1	1	0	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0028	3650	1	0	0	1	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0029	3649	1	1	0	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0030	3649	1	1	0	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773