JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAFA2_chr12_61703273_62197773	0/0	t0031	3650	1	1	0	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA2_chr12_61703273_62197773	0/0	t0032	3649	1	1	0	0	0	0	copy fasta	TAFA2	chr12	61703273	62197773
TAFA3_chr1_112713905_112732235	1/1	t0001	1049	393	76	75	183	12	45	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	t0002	1049	11	11	0	0	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	t0003	1049	10	10	0	0	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	t0004	1049	2	0	0	2	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	t0005	1049	1	1	0	0	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	t0006	1049	1	0	0	0	0	1	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	t0007	1049	1	1	0	0	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	t0008	1049	1	1	0	0	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	t0009	1049	1	0	1	0	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	t0010	1049	1	0	0	0	0	1	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	t0011	1049	1	0	0	1	0	0	copy fasta	TAFA3	chr1	112713905	112732235
TAFA3_chr1_112713905_112732235	0/0	t0012	1049	1	0	0	0	0	1	copy fasta	TAFA3	chr1	112713905	112732235
TAFA4_chr3_68726766_68937547	0/0	t0001	1797	115	22	19	55	4	15	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0002	1797	59	0	11	39	0	9	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	1/0	t0003	1807	49	22	11	2	8	5	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0004	1807	19	2	0	17	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0005	1807	13	0	10	3	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0006	1807	9	0	1	8	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0007	1807	7	7	0	0	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0008	1797	6	6	0	0	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/1	t0009	1807	6	0	1	3	0	1	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0010	1807	5	3	0	2	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0011	1807	4	4	0	0	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0012	1797	2	2	0	0	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0013	1807	2	2	0	0	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0014	1797	2	2	0	0	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0015	1807	1	0	0	0	0	1	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0016	1797	1	0	0	1	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0017	1797	1	0	1	0	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0018	1797	1	0	0	1	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0019	1797	1	0	0	1	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0020	1797	1	1	0	0	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0021	1797	1	1	0	0	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0022	1794	1	0	0	1	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0023	1807	1	0	0	1	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0024	1807	1	0	0	0	0	1	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0025	1807	1	1	0	0	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0026	1807	1	1	0	0	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0027	1797	1	1	0	0	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0028	1797	1	1	0	0	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0029	1807	1	0	0	1	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0030	1807	1	1	0	0	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0031	1807	1	1	0	0	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA4_chr3_68726766_68937547	0/0	t0032	1797	1	0	0	1	0	0	copy fasta	TAFA4	chr3	68726766	68937547
TAFA5_chr22_48484553_48756932	0/1	t0001	2126	82	4	8	54	1	14	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	1/0	t0002	2126	69	33	17	11	3	4	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0003	2126	40	11	15	3	4	7	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0004	2126	7	7	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932