JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAFA5_chr22_48484553_48756932	0/0	t0005	2126	6	0	2	4	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0006	2126	6	1	4	0	1	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0007	2126	5	5	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0008	2126	4	0	0	4	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0009	2126	3	3	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0010	2126	3	0	2	0	0	1	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0011	2126	2	0	2	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0012	2126	2	1	1	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0013	2126	2	2	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0014	2126	2	2	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0015	2126	2	2	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0016	2126	1	0	0	1	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0017	2126	1	1	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0018	2126	1	1	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0019	2126	1	0	1	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0020	2126	1	1	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0021	2126	1	0	0	1	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0022	2126	1	0	0	0	1	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0023	2126	1	0	0	0	0	1	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0024	2126	1	0	0	1	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0025	2153	1	0	0	1	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0026	2126	1	0	0	1	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0027	2126	1	0	1	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0028	2126	1	1	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0029	2126	1	1	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0030	2126	1	1	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0031	2126	1	0	0	1	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0032	2126	1	1	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0033	2126	1	1	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0034	2126	1	0	1	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0035	2126	1	0	0	0	0	1	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0036	2126	1	1	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0037	2126	1	1	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFA5_chr22_48484553_48756932	0/0	t0038	2126	1	1	0	0	0	0	copy fasta	TAFA5	chr22	48484553	48756932
TAFAZZIN_chrX_154406539_154426726	1/1	t0001	1028	196	34	36	87	10	27	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	t0002	1029	41	8	18	11	1	3	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	t0003	1029	30	27	3	0	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	t0004	1028	6	0	0	6	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	t0005	1028	4	0	2	2	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	t0006	1028	1	0	0	1	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	t0007	1030	1	0	0	1	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	t0008	1029	1	0	0	1	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	t0009	1027	1	0	0	1	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	t0010	1029	1	0	0	1	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	t0011	1029	1	1	0	0	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	t0012	1029	1	0	0	1	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAFAZZIN_chrX_154406539_154426726	0/0	t0013	1028	1	0	0	1	0	0	copy fasta	TAFAZZIN	chrX	154406539	154426726
TAGAP_chr6_159029481_159049991	0/1	t0001	1518	148	28	29	57	5	28	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	1/0	t0002	1518	115	46	25	37	1	5	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	t0003	1518	90	2	9	74	1	4	copy fasta	TAGAP	chr6	159029481	159049991