JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAGAP_chr6_159029481_159049991	0/0	t0004	1518	8	3	3	0	1	1	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	t0005	1518	7	6	1	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	t0006	1518	6	6	0	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	t0007	1518	3	3	0	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	t0008	1518	3	0	2	0	0	1	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	t0009	1518	3	0	0	0	0	3	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	t0010	1518	2	2	0	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	t0011	1518	2	0	0	2	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	t0012	1518	1	0	0	1	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	t0013	1518	1	0	1	0	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGAP_chr6_159029481_159049991	0/0	t0014	1518	1	0	0	1	0	0	copy fasta	TAGAP	chr6	159029481	159049991
TAGLN2_chr1_159913111_159930507	1/1	t0001	776	396	74	79	179	16	46	copy fasta	TAGLN2	chr1	159913111	159930507
TAGLN2_chr1_159913111_159930507	0/0	t0002	776	28	15	1	10	0	2	copy fasta	TAGLN2	chr1	159913111	159930507
TAGLN2_chr1_159913111_159930507	0/0	t0003	776	15	0	0	15	0	0	copy fasta	TAGLN2	chr1	159913111	159930507
TAGLN2_chr1_159913111_159930507	0/0	t0004	776	4	4	0	0	0	0	copy fasta	TAGLN2	chr1	159913111	159930507
TAGLN2_chr1_159913111_159930507	0/0	t0005	776	2	2	0	0	0	0	copy fasta	TAGLN2	chr1	159913111	159930507
TAGLN2_chr1_159913111_159930507	0/0	t0006	776	1	1	0	0	0	0	copy fasta	TAGLN2	chr1	159913111	159930507
TAGLN3_chr3_111993922_112018885	1/1	t0001	530	273	69	46	120	12	24	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN3_chr3_111993922_112018885	0/0	t0002	530	66	9	12	36	2	7	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN3_chr3_111993922_112018885	0/0	t0003	530	52	0	5	38	1	8	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN3_chr3_111993922_112018885	0/0	t0004	530	46	3	16	20	1	6	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN3_chr3_111993922_112018885	0/0	t0005	538	9	7	2	0	0	0	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN3_chr3_111993922_112018885	0/0	t0006	542	7	7	0	0	0	0	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN3_chr3_111993922_112018885	0/0	t0007	534	3	2	1	0	0	0	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN3_chr3_111993922_112018885	0/0	t0008	534	2	0	0	2	0	0	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN3_chr3_111993922_112018885	0/0	t0009	530	2	0	0	2	0	0	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN3_chr3_111993922_112018885	0/0	t0010	534	1	0	0	0	0	1	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN3_chr3_111993922_112018885	0/0	t0011	534	1	1	0	0	0	0	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN3_chr3_111993922_112018885	0/0	t0012	530	1	0	0	1	0	0	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN3_chr3_111993922_112018885	0/0	t0013	530	1	0	0	1	0	0	copy fasta	TAGLN3	chr3	111993922	112018885
TAGLN_chr11_117194370_117212464	1/1	t0001	3181	170	22	47	72	11	16	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0002	3182	81	9	10	56	0	6	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0003	3182	30	0	2	19	1	8	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0004	3182	27	4	2	15	1	5	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0005	3179	18	0	3	5	2	8	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0006	3181	13	0	1	12	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0007	3183	12	5	0	7	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0008	3181	12	7	4	1	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0009	3183	10	0	0	10	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0010	3182	8	7	1	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0011	3180	7	0	4	3	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0012	3182	6	5	1	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0013	3182	6	6	0	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0014	3181	5	3	2	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0015	3182	4	4	0	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0016	3181	4	3	1	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0017	3181	3	2	0	1	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0018	3181	3	3	0	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0019	3181	3	0	0	3	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0020	3179	2	0	0	0	0	2	copy fasta	TAGLN	chr11	117194370	117212464