JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAGLN_chr11_117194370_117212464	0/0	t0021	3183	2	0	2	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0022	3182	2	0	2	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0023	3181	2	2	0	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0024	3182	1	0	0	1	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0025	3183	1	1	0	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0026	3183	1	0	0	1	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0027	3183	1	1	0	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0028	3179	1	0	0	0	0	1	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0029	3179	1	0	0	0	1	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0030	3182	1	1	0	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0031	3182	1	0	0	0	0	1	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0032	3182	1	0	1	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0033	3182	1	0	0	1	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0034	3182	1	0	1	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0035	3182	1	0	0	0	0	1	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0036	3182	1	0	0	1	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0037	3182	1	0	1	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0038	3182	1	1	0	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0039	3182	1	0	0	1	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0040	3182	1	0	0	1	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0041	3182	1	0	0	1	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0042	3181	1	0	0	1	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0043	3181	1	1	0	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0044	3181	1	1	0	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0045	3181	1	0	0	0	0	1	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0046	3181	1	1	0	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0047	3182	1	0	0	1	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0048	3181	1	0	0	0	0	1	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0049	3181	1	1	0	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0050	3181	1	0	1	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0051	3180	1	1	0	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0052	3180	1	1	0	0	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAGLN_chr11_117194370_117212464	0/0	t0053	3182	1	0	0	1	0	0	copy fasta	TAGLN	chr11	117194370	117212464
TAL1_chr1_47211291_47237225	1/0	t0001	3645	102	9	20	62	3	7	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/1	t0002	3645	75	13	16	35	3	7	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0003	3646	61	14	21	0	8	18	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0004	3645	57	0	3	49	0	5	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0005	3647	19	18	1	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0006	3645	9	0	0	9	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0007	3645	8	7	1	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0008	3645	8	7	1	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0009	3647	7	1	2	0	0	4	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0010	3645	6	4	1	0	0	1	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0011	3649	5	0	0	5	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0012	3645	4	0	0	4	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0013	3645	4	4	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0014	3645	4	0	0	4	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0015	3645	3	2	1	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0016	3642	3	0	0	3	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0017	3646	3	0	1	0	2	0	copy fasta	TAL1	chr1	47211291	47237225