JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAL1_chr1_47211291_47237225	0/0	t0018	3645	2	0	0	2	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0019	3645	2	0	0	2	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0020	3645	2	2	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0021	3645	2	0	0	2	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0022	3647	2	0	0	2	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0023	3645	2	2	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0024	3647	2	2	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0025	3645	1	1	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0026	3646	1	0	0	0	1	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0027	3646	1	0	0	1	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0028	3645	1	1	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0029	3645	1	0	0	0	0	1	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0030	3648	1	1	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0031	3646	1	0	0	1	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0032	3645	1	0	0	1	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0033	3645	1	1	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0034	3645	1	1	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0035	3646	1	0	0	1	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0036	3645	1	0	0	0	1	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0037	3646	1	0	0	1	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0038	3645	1	1	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0039	3647	1	1	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0040	3645	1	1	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0041	3647	1	0	1	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0042	3649	1	0	1	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0043	3647	1	0	0	0	0	1	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0044	3645	1	0	0	1	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0045	3650	1	0	0	1	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL1_chr1_47211291_47237225	0/0	t0046	3645	1	1	0	0	0	0	copy fasta	TAL1	chr1	47211291	47237225
TAL2_chr9_105657457_105668124	1/1	t0001	342	260	50	52	105	15	36	copy fasta	TAL2	chr9	105657457	105668124
TAL2_chr9_105657457_105668124	0/0	t0002	341	119	18	17	74	2	8	copy fasta	TAL2	chr9	105657457	105668124
TAL2_chr9_105657457_105668124	0/0	t0003	342	20	19	0	1	0	0	copy fasta	TAL2	chr9	105657457	105668124
TAL2_chr9_105657457_105668124	0/0	t0004	341	18	8	9	0	1	0	copy fasta	TAL2	chr9	105657457	105668124
TAL2_chr9_105657457_105668124	0/0	t0005	342	2	2	0	0	0	0	copy fasta	TAL2	chr9	105657457	105668124
TAL2_chr9_105657457_105668124	0/0	t0006	342	1	1	0	0	0	0	copy fasta	TAL2	chr9	105657457	105668124
TALDO1_chr11_742464_770012	1/1	t0001	186	411	90	74	180	18	47	copy fasta	TALDO1	chr11	742464	770012
TALDO1_chr11_742464_770012	0/0	t0002	186	2	2	0	0	0	0	copy fasta	TALDO1	chr11	742464	770012
TALDO1_chr11_742464_770012	0/0	t0003	186	1	1	0	0	0	0	copy fasta	TALDO1	chr11	742464	770012
TALDO1_chr11_742464_770012	0/0	t0004	186	1	0	0	0	0	1	copy fasta	TALDO1	chr11	742464	770012
TALDO1_chr11_742464_770012	0/0	t0005	186	1	1	0	0	0	0	copy fasta	TALDO1	chr11	742464	770012
TAMALIN_chr12_52001946_52020889	1/1	t0001	765	366	79	66	157	16	46	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	t0002	765	10	10	0	0	0	0	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	t0003	765	2	0	0	2	0	0	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	t0004	765	1	0	0	1	0	0	copy fasta	TAMALIN	chr12	52001946	52020889
TAMALIN_chr12_52001946_52020889	0/0	t0005	765	1	1	0	0	0	0	copy fasta	TAMALIN	chr12	52001946	52020889
TAMM41_chr3_11785442_11851885	1/0	t0001	313	187	47	21	101	2	15	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	t0002	313	94	33	17	27	5	12	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/1	t0003	313	50	4	21	12	7	5	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	t0004	313	40	3	11	14	4	8	copy fasta	TAMM41	chr3	11785442	11851885
TAMM41_chr3_11785442_11851885	0/0	t0005	313	1	1	0	0	0	0	copy fasta	TAMM41	chr3	11785442	11851885