JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TANC1_chr2_158963640_159237659	0/0	t0001	1920	56	23	3	23	3	4	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/1	t0002	1920	55	1	18	23	4	8	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0003	1920	37	0	19	4	6	8	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	1/0	t0004	1916	32	21	2	3	1	4	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0005	1916	18	2	0	10	0	6	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0006	1916	12	9	2	1	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0007	1920	10	0	7	3	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0008	1920	8	4	0	4	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0009	1920	6	6	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0010	1920	5	0	0	5	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0011	1916	5	0	0	5	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0012	1916	5	0	0	3	0	2	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0013	1920	2	0	0	2	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0014	1920	2	2	0	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0015	1916	1	0	1	0	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0016	1920	1	0	0	1	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0017	1920	1	0	0	1	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0018	1916	1	0	0	1	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC1_chr2_158963640_159237659	0/0	t0019	1916	1	0	0	1	0	0	copy fasta	TANC1	chr2	158963640	159237659
TANC2_chr17_62961235_63432703	1/0	t0001	6287	136	30	29	53	4	19	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/1	t0002	6275	49	7	21	11	4	5	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0003	6287	13	12	1	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0004	6275	8	0	0	8	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0005	6287	7	4	3	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0006	6287	6	6	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0007	6287	4	0	0	4	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0008	6287	4	0	0	0	0	4	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0009	6287	3	3	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0010	6287	3	2	1	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0011	6287	3	0	0	3	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0012	6275	3	3	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0013	6275	3	0	0	0	0	3	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0014	6275	2	0	1	0	1	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0015	6287	2	0	0	0	0	2	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0016	6287	1	0	0	1	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0017	6287	1	1	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0018	6287	1	0	1	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0019	6287	1	1	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0020	6287	1	0	1	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0021	6275	1	0	0	1	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0022	6287	1	0	1	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0023	6287	1	0	0	0	0	1	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0024	6287	1	1	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0025	6287	1	0	1	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0026	6287	1	1	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0027	6275	1	1	0	0	0	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0028	6287	1	0	0	0	0	1	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0029	6287	1	0	0	0	1	0	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0030	6287	1	0	0	0	0	1	copy fasta	TANC2	chr17	62961235	63432703
TANC2_chr17_62961235_63432703	0/0	t0031	6287	1	0	1	0	0	0	copy fasta	TANC2	chr17	62961235	63432703