JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TANGO6_chr16_68838531_69090182	0/0	t0008	1609	1	1	0	0	0	0	copy fasta	TANGO6	chr16	68838531	69090182
TANK_chr2_161155428_161241230	1/0	t0001	821	130	35	21	45	6	22	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/1	t0002	821	90	11	19	45	6	8	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	t0003	824	45	1	3	33	2	6	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	t0004	823	23	18	4	1	0	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	t0005	820	5	1	0	1	1	2	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	t0006	822	4	3	0	1	0	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	t0007	823	4	4	0	0	0	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	t0008	822	4	1	0	3	0	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	t0009	820	4	0	0	2	1	1	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	t0010	822	3	1	1	0	0	1	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	t0011	821	1	1	0	0	0	0	copy fasta	TANK	chr2	161155428	161241230
TANK_chr2_161155428_161241230	0/0	t0012	774	1	0	0	1	0	0	copy fasta	TANK	chr2	161155428	161241230
TAOK1_chr17_29385363_29556903	0/0	t0001	9640	44	6	6	21	3	8	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	1/0	t0002	9638	42	4	5	24	4	4	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0003	9641	24	2	3	13	1	5	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/1	t0004	9643	23	5	8	1	3	5	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0005	9639	22	3	3	13	0	3	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0006	9640	21	2	7	8	2	2	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0007	9640	18	16	1	0	0	1	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0008	9643	17	0	9	2	2	4	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0009	9644	13	0	6	2	2	3	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0010	9640	7	7	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0011	9641	7	0	3	3	0	1	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0012	9640	6	0	0	6	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0013	9641	6	6	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0014	9640	4	0	3	1	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0015	9640	4	4	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0016	9639	4	3	1	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0017	9644	4	0	1	0	0	3	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0018	9641	3	3	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0019	9640	2	2	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0020	9638	2	0	0	2	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0021	9643	2	2	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0022	9643	2	2	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0023	9643	2	2	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0024	9641	2	2	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0025	9641	2	2	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0026	9641	2	1	1	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0027	9641	2	1	1	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0028	9640	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0029	9641	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0030	9643	1	0	0	0	0	1	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0031	9640	1	0	0	1	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0032	9640	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0033	9640	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0034	9640	1	0	0	1	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0035	9640	1	0	0	0	0	1	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0036	9640	1	0	0	1	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0037	9640	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903