JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAOK1_chr17_29385363_29556903	0/0	t0038	9640	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0039	9640	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0040	9640	1	0	1	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0041	9640	1	0	0	1	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0042	9640	1	0	1	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0043	9640	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0044	9640	1	0	1	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0045	9640	1	0	0	0	1	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0046	9638	1	0	0	1	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0047	9638	1	0	0	1	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0048	9638	1	0	0	0	0	1	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0049	9640	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0050	9640	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0051	9640	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0052	9640	1	0	0	1	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0053	9641	1	0	0	1	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0054	9641	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0055	9641	1	0	1	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0056	9641	1	0	1	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0057	9641	1	0	1	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0058	9641	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0059	9639	1	0	0	1	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0060	9639	1	0	0	1	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0061	9644	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0062	9640	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0063	9641	1	0	0	1	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0064	9640	1	0	0	1	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0065	9641	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK1_chr17_29385363_29556903	0/0	t0066	9640	1	1	0	0	0	0	copy fasta	TAOK1	chr17	29385363	29556903
TAOK2_chr16_29968868_29993393	1/1	t0001	1230	321	76	58	144	12	29	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	t0002	1236	7	6	1	0	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	t0003	1230	6	0	4	0	2	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	t0004	1230	2	2	0	0	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	t0005	1230	2	0	0	2	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	t0006	1230	2	0	0	2	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	t0007	1230	1	0	0	1	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	t0008	1230	1	0	0	0	0	1	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	t0009	1230	1	0	0	1	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	t0010	1230	1	0	0	1	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	t0011	1230	1	0	1	0	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK2_chr16_29968868_29993393	0/0	t0012	1230	1	0	0	1	0	0	copy fasta	TAOK2	chr16	29968868	29993393
TAOK3_chr12_118144801_118377907	1/1	t0001	1650	212	49	35	99	8	19	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	t0002	1652	35	1	0	34	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	t0003	1650	16	7	4	2	2	1	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	t0004	1652	9	0	3	0	3	3	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	t0005	1651	9	5	1	3	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	t0006	1650	9	9	0	0	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	t0007	1651	8	5	0	3	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	t0008	1649	5	1	0	0	1	3	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	t0009	1649	4	2	1	1	0	0	copy fasta	TAOK3	chr12	118144801	118377907