JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAOK3_chr12_118144801_118377907	0/0	t0010	1651	1	0	0	1	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	t0011	1651	1	0	1	0	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	t0012	1650	1	0	1	0	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	t0013	1651	1	1	0	0	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	t0014	1650	1	0	0	1	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	t0015	1651	1	1	0	0	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAOK3_chr12_118144801_118377907	0/0	t0016	1650	1	1	0	0	0	0	copy fasta	TAOK3	chr12	118144801	118377907
TAP1_chr6_32840209_32858704	0/0	t0001	439	351	68	60	178	14	31	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	t0002	439	51	3	9	30	1	8	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/1	t0003	439	39	2	10	18	0	8	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	t0004	439	15	12	3	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	t0005	439	5	2	2	0	0	1	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	t0006	439	4	0	3	0	1	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	t0007	439	3	3	0	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	t0008	439	2	2	0	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	t0009	439	1	1	0	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	t0010	439	1	0	1	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP1_chr6_32840209_32858704	0/0	t0011	439	1	1	0	0	0	0	copy fasta	TAP1	chr6	32840209	32858704
TAP2_chr6_32820415_32843739	0/0	t0001	3416	88	9	8	57	1	13	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0002	3583	67	3	13	42	4	5	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0003	3416	55	2	17	24	0	12	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0004	3583	54	12	12	26	3	1	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0005	3583	37	20	6	3	4	4	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0006	3583	36	8	7	16	0	5	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0007	3583	21	0	4	17	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0008	3583	19	3	8	7	1	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/1	t0009	3583	15	1	0	12	1	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0010	3583	10	0	4	0	2	4	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0011	3580	8	8	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0012	3583	6	1	1	4	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0013	3583	6	0	0	6	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0014	3583	6	3	3	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0015	3583	5	0	0	0	1	4	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0016	3583	5	5	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0017	3583	4	3	1	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0018	3594	4	3	1	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0019	3583	4	0	0	4	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0020	3583	3	0	0	3	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0021	3583	3	3	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0022	3580	3	3	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0023	3580	3	3	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0024	3416	2	0	2	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0025	3416	2	2	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0026	3583	1	0	0	0	1	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0027	3583	1	0	1	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0028	3583	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0029	3583	1	0	0	1	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0030	3583	1	0	0	0	0	1	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0031	3583	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0032	3593	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739