JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAP2_chr6_32820415_32843739	0/0	t0033	3416	1	0	0	1	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0034	3593	1	0	0	0	0	1	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0035	3583	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0036	3583	1	0	0	1	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0037	3583	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0038	3583	1	0	0	1	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0039	3583	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0040	3583	1	0	0	1	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0041	3415	1	0	0	1	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0042	3593	1	0	0	1	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0043	3593	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAP2_chr6_32820415_32843739	0/0	t0044	3416	1	1	0	0	0	0	copy fasta	TAP2	chr6	32820415	32843739
TAPBPL_chr12_6447042_6467316	1/1	t0001	375	432	71	80	216	15	48	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	t0002	375	16	16	0	0	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	t0003	375	4	4	0	0	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	t0004	374	4	4	0	0	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	t0005	375	3	0	0	0	3	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBPL_chr12_6447042_6467316	0/0	t0006	375	1	1	0	0	0	0	copy fasta	TAPBPL	chr12	6447042	6467316
TAPBP_chr6_33294694_33319078	0/1	t0001	2104	132	21	28	67	6	9	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0002	2111	83	1	20	40	7	15	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0003	2111	59	17	14	19	1	8	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0004	2110	17	11	1	2	0	3	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0005	2113	13	13	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0006	2118	11	9	2	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0007	2104	9	1	0	8	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0008	2105	7	7	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0009	2110	4	4	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0010	2105	4	2	0	2	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0011	2112	3	0	0	3	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0012	2118	3	0	0	3	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0013	2118	3	0	0	2	0	1	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0014	2103	3	0	2	1	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0015	2104	3	3	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0016	2112	2	0	0	2	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0017	1731	2	2	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0018	2118	2	0	2	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0019	2119	2	2	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0020	2112	2	1	0	1	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0021	2112	2	0	0	2	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0022	2105	2	0	1	1	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0023	2111	1	0	1	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0024	2111	1	0	0	1	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0025	2104	1	0	0	1	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0026	2118	1	0	0	1	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0027	2119	1	0	0	1	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0028	2110	1	1	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0029	2103	1	0	0	1	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0030	2429	1	1	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0031	2104	1	0	0	0	0	1	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0032	2103	1	0	0	1	0	0	copy fasta	TAPBP	chr6	33294694	33319078