Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BOC_chr3_113206557_113292459	0/0	t0056	1228	1	1	0	0	0	0	copy fasta	BOC	chr3	113206557	113292459
BOD1L1_chr4_13563738_13632725	1/1	t0001	1412	228	60	61	61	13	31	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	t0002	1413	13	13	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	t0003	1411	4	1	1	2	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	t0004	1412	3	0	0	3	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	t0005	1412	3	3	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	t0006	1412	2	0	0	2	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	t0007	1412	2	0	0	2	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	t0008	1412	1	0	0	0	0	1	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	t0009	1412	1	0	0	0	1	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L1_chr4_13563738_13632725	0/0	t0010	1427	1	1	0	0	0	0	copy fasta	BOD1L1	chr4	13563738	13632725
BOD1L2_chr18_57142087_57155410	1/1	t0001	2806	134	23	22	67	8	12	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0002	2800	112	8	13	73	2	16	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0003	2806	81	8	20	44	3	6	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0004	2806	30	7	10	8	1	4	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0005	2801	14	0	1	13	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0006	2806	13	1	0	12	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0007	2802	12	1	0	11	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0008	2802	10	9	1	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0009	2806	9	7	2	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0010	2806	5	5	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0011	2800	5	5	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0012	2801	5	5	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0013	2800	5	0	2	3	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0014	2806	3	0	0	3	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0015	2804	3	0	1	1	0	1	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0016	2802	3	0	0	0	0	3	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0017	2802	2	2	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0018	2806	2	2	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0019	2804	2	2	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0020	2800	2	0	2	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0021	2806	2	0	0	0	2	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0022	2801	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0023	2806	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0024	2806	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0025	2806	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0026	2806	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0027	2802	1	0	1	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0028	2806	1	0	1	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0029	2754	1	0	1	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0030	2806	1	0	0	1	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0031	2800	1	0	0	0	0	1	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0032	2806	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0033	2806	1	1	0	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0034	2806	1	0	0	0	0	1	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1L2_chr18_57142087_57155410	0/0	t0035	2806	1	0	1	0	0	0	copy fasta	BOD1L2	chr18	57142087	57155410
BOD1_chr5_173602145_173621650	0/0	t0001	1363	177	31	17	109	5	15	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	1/0	t0002	1363	153	29	46	44	10	23	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	t0003	1363	43	9	9	20	2	3	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	t0004	1363	23	15	5	2	0	1	copy fasta	BOD1	chr5	173602145	173621650