JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAPBP_chr6_33294694_33319078	0/0	t0033	2103	1	0	0	1	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0034	2111	1	1	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0035	2119	1	0	0	0	0	1	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0036	2104	1	1	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0037	2104	1	1	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0038	2104	1	1	0	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPBP_chr6_33294694_33319078	0/0	t0039	2104	1	0	1	0	0	0	copy fasta	TAPBP	chr6	33294694	33319078
TAPT1_chr4_16155505_16231471	0/0	t0001	2819	76	1	14	52	2	7	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	1/0	t0002	2818	72	0	16	47	3	5	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/1	t0003	2821	70	5	5	46	2	11	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0004	2818	37	24	5	2	1	5	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0005	2821	32	17	8	0	0	7	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0006	2821	21	11	0	10	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0007	2820	21	3	6	1	1	10	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0008	2821	14	14	0	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0009	2817	13	7	1	4	0	1	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0010	2821	3	3	0	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0011	2821	3	3	0	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0012	2817	2	0	2	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0013	2821	2	0	0	2	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0014	2818	2	0	2	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0015	2821	2	1	1	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0016	2821	1	1	0	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0017	2821	1	0	0	0	0	1	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0018	2819	1	0	0	0	1	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0019	2819	1	0	0	1	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0020	2819	1	0	0	1	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0021	2819	1	0	0	1	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0022	2819	1	0	0	1	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0023	2821	1	1	0	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0024	2819	1	0	0	1	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0025	2818	1	0	0	1	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0026	2818	1	0	0	0	0	1	copy fasta	TAPT1	chr4	16155505	16231471
TAPT1_chr4_16155505_16231471	0/0	t0027	2821	1	1	0	0	0	0	copy fasta	TAPT1	chr4	16155505	16231471
TARBP1_chr1_234386313_234484179	1/1	t0001	341	212	39	48	87	6	30	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	t0002	341	26	14	4	7	0	1	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	t0003	341	24	11	6	0	4	3	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	t0004	341	5	2	3	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	t0005	341	3	3	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	t0006	341	2	2	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	t0007	341	1	0	1	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP1_chr1_234386313_234484179	0/0	t0008	341	1	1	0	0	0	0	copy fasta	TARBP1	chr1	234386313	234484179
TARBP2_chr12_53496283_53511431	1/1	t0001	410	328	86	66	115	14	45	copy fasta	TARBP2	chr12	53496283	53511431
TARBP2_chr12_53496283_53511431	0/0	t0002	410	4	4	0	0	0	0	copy fasta	TARBP2	chr12	53496283	53511431
TARBP2_chr12_53496283_53511431	0/0	t0003	410	1	0	0	1	0	0	copy fasta	TARBP2	chr12	53496283	53511431
TARBP2_chr12_53496283_53511431	0/0	t0004	410	1	0	0	0	0	1	copy fasta	TARBP2	chr12	53496283	53511431
TARDBP_chr1_11007654_11030492	0/1	t0001	2946	309	83	53	131	8	33	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	1/0	t0002	2941	28	1	6	16	0	4	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	t0003	2946	5	5	0	0	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	t0004	2946	3	1	0	0	2	0	copy fasta	TARDBP	chr1	11007654	11030492