JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TARDBP_chr1_11007654_11030492	0/0	t0005	2946	2	0	0	2	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	t0006	2946	2	2	0	0	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	t0007	2946	1	0	1	0	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	t0008	2946	1	0	0	1	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	t0009	2946	1	0	0	0	0	1	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	t0010	2946	1	0	0	1	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	t0011	2946	1	0	0	1	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	t0012	2946	1	0	0	1	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	t0013	2946	1	1	0	0	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	t0014	2946	1	0	0	1	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	t0015	2946	1	0	1	0	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	t0016	2946	1	1	0	0	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARDBP_chr1_11007654_11030492	0/0	t0017	2946	1	0	1	0	0	0	copy fasta	TARDBP	chr1	11007654	11030492
TARM1_chr19_54064895_54086365	0/1	t0001	134	409	96	76	176	14	46	copy fasta	TARM1	chr19	54064895	54086365
TARP_chr7_38254643_38278636	1/0	t0001	840	233	28	61	107	10	26	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0002	840	65	5	9	38	3	10	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0003	840	60	21	2	34	0	3	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0004	840	30	0	1	21	3	5	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0005	840	21	21	0	0	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0006	840	10	8	2	0	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0007	840	9	2	0	6	0	1	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0008	840	5	4	1	0	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0009	840	5	1	0	3	0	1	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0010	840	4	0	2	2	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0011	840	3	0	0	3	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0012	840	2	2	0	0	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0013	840	2	2	0	0	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0014	840	1	0	0	1	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0015	840	1	1	0	0	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0016	840	1	1	0	0	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0017	840	1	1	0	0	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0018	840	1	1	0	0	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0019	840	1	0	0	1	0	0	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0020	840	1	0	0	0	0	1	copy fasta	TARP	chr7	38254643	38278636
TARP_chr7_38254643_38278636	0/0	t0021	840	1	0	0	0	0	1	copy fasta	TARP	chr7	38254643	38278636
TARS1_chr5_33435965_33473086	1/1	t0001	501	255	32	47	138	8	28	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	t0002	501	77	47	11	5	3	11	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	t0003	501	65	9	5	43	1	7	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	t0004	501	6	1	1	2	0	2	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	t0005	501	3	0	0	3	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	t0006	501	2	2	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	t0007	501	1	0	0	1	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	t0008	501	1	1	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	t0009	501	1	1	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS1_chr5_33435965_33473086	0/0	t0010	501	1	1	0	0	0	0	copy fasta	TARS1	chr5	33435965	33473086
TARS2_chr1_150482419_150512602	1/0	t0001	571	209	35	32	108	7	26	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	t0002	571	87	2	20	45	5	15	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	t0003	568	33	4	7	22	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	t0004	572	15	15	0	0	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	t0005	567	13	13	0	0	0	0	copy fasta	TARS2	chr1	150482419	150512602