JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TARS2_chr1_150482419_150512602	0/0	t0006	579	11	7	1	0	2	1	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/1	t0007	571	8	0	5	1	0	1	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	t0008	571	7	6	1	0	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	t0009	568	6	6	0	0	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	t0010	571	3	0	0	3	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	t0011	571	1	0	0	0	0	1	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	t0012	579	1	1	0	0	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	t0013	571	1	0	0	1	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	t0014	571	1	0	1	0	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	t0015	571	1	0	0	1	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	t0016	571	1	0	0	1	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	t0017	568	1	0	1	0	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS2_chr1_150482419_150512602	0/0	t0018	568	1	1	0	0	0	0	copy fasta	TARS2	chr1	150482419	150512602
TARS3_chr15_101648596_101729473	1/1	t0001	1073	85	8	18	48	3	6	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	t0002	1073	70	28	11	21	3	7	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	t0003	1073	54	18	19	6	2	9	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	t0004	1073	45	19	7	8	3	8	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	t0005	1071	7	0	0	3	0	4	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	t0006	1073	4	2	2	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	t0007	1074	4	3	1	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	t0008	1070	3	3	0	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	t0009	1073	2	0	1	0	1	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	t0010	1074	2	0	2	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	t0011	1073	1	0	1	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TARS3_chr15_101648596_101729473	0/0	t0012	1073	1	1	0	0	0	0	copy fasta	TARS3	chr15	101648596	101729473
TAS1R1_chr1_6550307_6584755	1/1	t0001	239	387	83	74	168	14	46	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R1_chr1_6550307_6584755	0/0	t0002	239	13	13	0	0	0	0	copy fasta	TAS1R1	chr1	6550307	6584755
TAS1R3_chr1_1326280_1340314	0/1	t0001	917	268	47	63	112	14	31	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	1/0	t0002	917	43	5	2	31	0	4	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0003	917	28	13	1	12	1	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0004	917	11	9	2	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0005	917	9	8	1	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0006	917	6	5	1	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0007	917	5	0	0	0	0	5	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0008	916	3	0	2	0	0	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0009	917	2	0	0	0	1	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0010	917	2	2	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0011	917	2	0	0	2	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0012	917	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0013	917	1	0	0	0	0	1	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0014	917	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0015	917	1	0	0	1	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0016	917	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0017	917	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS1R3_chr1_1326280_1340314	0/0	t0018	917	1	1	0	0	0	0	copy fasta	TAS1R3	chr1	1326280	1340314
TAS2R10_chr12_10820219_10831358	0/1	t0001	217	413	83	80	186	18	45	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	t0002	217	3	3	0	0	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	t0003	217	3	3	0	0	0	0	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R10_chr12_10820219_10831358	0/0	t0004	217	2	1	0	0	0	1	copy fasta	TAS2R10	chr12	10820219	10831358
TAS2R13_chr12_10902926_10914562	0/0	t0001	726	233	19	39	142	8	25	copy fasta	TAS2R13	chr12	10902926	10914562