JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAS2R13_chr12_10902926_10914562	0/1	t0002	726	169	65	34	48	6	15	copy fasta	TAS2R13	chr12	10902926	10914562
TAS2R13_chr12_10902926_10914562	0/0	t0003	726	2	1	1	0	0	0	copy fasta	TAS2R13	chr12	10902926	10914562
TAS2R13_chr12_10902926_10914562	0/0	t0004	726	2	0	0	2	0	0	copy fasta	TAS2R13	chr12	10902926	10914562
TAS2R13_chr12_10902926_10914562	0/0	t0005	726	1	1	0	0	0	0	copy fasta	TAS2R13	chr12	10902926	10914562
TAS2R14_chr12_10932410_10944263	0/0	t0001	901	228	20	41	127	8	32	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/1	t0002	901	165	59	39	47	6	13	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	t0003	901	11	11	0	0	0	0	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	t0004	901	4	1	1	0	0	2	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	t0005	901	1	0	0	0	0	1	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	t0006	901	1	1	0	0	0	0	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R14_chr12_10932410_10944263	0/0	t0007	901	1	0	1	0	0	0	copy fasta	TAS2R14	chr12	10932410	10944263
TAS2R16_chr7_122989704_123000700	1/1	t0001	122	415	92	75	188	12	46	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R16_chr7_122989704_123000700	0/0	t0002	122	1	0	1	0	0	0	copy fasta	TAS2R16	chr7	122989704	123000700
TAS2R19_chr12_11016619_11027620	0/1	t0001	103	417	92	78	186	14	46	copy fasta	TAS2R19	chr12	11016619	11027620
TAS2R1_chr5_9622347_9635351	0/0	t0001	2102	113	22	33	40	4	14	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0002	2106	69	20	10	23	4	12	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0003	2106	47	2	2	42	0	1	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	1/1	t0004	2106	37	1	10	20	2	2	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0005	2110	33	18	7	5	0	3	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0006	2110	31	0	3	28	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0007	2110	28	1	5	15	2	5	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0008	2102	18	3	1	12	0	2	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0009	2098	10	3	2	1	1	3	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0010	2114	7	1	2	1	3	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0011	2114	7	0	0	7	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0012	2094	6	6	0	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0013	2102	5	4	0	1	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0014	2114	4	4	0	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0015	2110	3	3	0	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0016	2118	3	0	0	3	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0017	2110	3	0	0	3	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0018	2114	3	0	0	3	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0019	2098	2	0	0	2	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0020	2102	2	0	2	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0021	2420	2	2	0	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0022	2094	2	0	0	2	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0023	2102	1	0	0	1	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0024	2102	1	0	1	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0025	2106	1	0	0	1	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0026	2106	1	0	0	1	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0027	2416	1	0	1	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0028	2106	1	1	0	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0029	2102	1	0	0	0	0	1	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0030	2110	1	0	0	1	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0031	2102	1	0	0	0	0	1	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0032	2418	1	1	0	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0033	2102	1	0	0	1	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0034	2094	1	1	0	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0035	2106	1	1	0	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0036	2106	1	0	0	1	0	0	copy fasta	TAS2R1	chr5	9622347	9635351