JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAS2R1_chr5_9622347_9635351	0/0	t0037	2110	1	0	0	1	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0038	2106	1	0	0	1	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0039	2102	1	0	1	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0040	2106	1	0	0	0	0	1	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0041	2110	1	0	1	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0042	2102	1	0	0	0	0	1	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0043	2106	1	0	1	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0044	2090	1	1	0	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R1_chr5_9622347_9635351	0/0	t0045	2098	1	1	0	0	0	0	copy fasta	TAS2R1	chr5	9622347	9635351
TAS2R20_chr12_10990961_11003304	0/0	t0001	1414	208	10	24	141	6	27	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/1	t0002	1415	69	4	15	39	2	8	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	t0003	1415	52	28	12	6	4	2	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	t0004	1415	49	26	17	0	2	4	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	t0005	1415	23	14	9	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	t0006	1415	6	6	0	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	t0007	1415	3	2	1	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	t0008	1414	2	0	0	2	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	t0009	1414	1	0	0	1	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	t0010	1415	1	1	0	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	t0011	1415	1	0	1	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	t0012	1415	1	0	0	0	0	1	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	t0013	1415	1	1	0	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	t0014	1414	1	0	1	0	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R20_chr12_10990961_11003304	0/0	t0015	1414	1	0	0	1	0	0	copy fasta	TAS2R20	chr12	10990961	11003304
TAS2R30_chr12_11127958_11139644	0/0	t0001	730	118	6	14	77	4	17	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/1	t0002	730	82	19	16	36	2	8	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	t0003	728	78	48	18	7	2	3	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	t0004	730	63	2	7	40	2	12	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	t0005	732	33	13	15	0	2	3	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	t0006	732	4	1	0	3	0	0	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	t0007	732	3	1	0	0	2	0	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	t0008	728	2	2	0	0	0	0	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	t0009	728	1	0	0	1	0	0	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R30_chr12_11127958_11139644	0/0	t0010	732	1	0	0	0	0	1	copy fasta	TAS2R30	chr12	11127958	11139644
TAS2R31_chr12_11025387_11036407	0/1	t0001	92	442	92	75	210	16	48	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R31_chr12_11025387_11036407	0/0	t0002	92	1	0	1	0	0	0	copy fasta	TAS2R31	chr12	11025387	11036407
TAS2R38_chr7_141967631_141978773	1/1	t0001	142	437	91	80	204	14	46	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R38_chr7_141967631_141978773	0/0	t0002	142	1	1	0	0	0	0	copy fasta	TAS2R38	chr7	141967631	141978773
TAS2R3_chr7_141759097_141770197	0/0	t0001	151	249	43	41	135	8	22	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	1/1	t0002	151	154	43	28	55	6	20	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	t0003	151	6	5	1	0	0	0	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	t0004	151	2	2	0	0	0	0	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R3_chr7_141759097_141770197	0/0	t0005	151	1	1	0	0	0	0	copy fasta	TAS2R3	chr7	141759097	141770197
TAS2R40_chr7_143217037_143228079	1/1	t0001	72	331	94	69	108	14	44	copy fasta	TAS2R40	chr7	143217037	143228079
TAS2R40_chr7_143217037_143228079	0/0	t0002	72	1	0	1	0	0	0	copy fasta	TAS2R40	chr7	143217037	143228079
TAS2R43_chr12_11086287_11097313	0/0	t0001	98	200	34	24	116	10	16	copy fasta	TAS2R43	chr12	11086287	11097313
TAS2R4_chr7_141771674_141786691	0/0	t0001	4126	149	14	37	84	5	9	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	1/1	t0002	4119	132	29	23	53	8	17	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0003	4123	40	0	2	36	0	2	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0004	4943	24	3	0	13	0	8	copy fasta	TAS2R4	chr7	141771674	141786691