JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAS2R4_chr7_141771674_141786691	0/0	t0005	4118	12	0	3	9	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0006	4118	10	9	1	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0007	4123	9	0	0	7	1	1	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0008	4118	7	6	1	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0009	4126	6	0	1	5	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0010	4126	6	0	1	0	2	3	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0011	4118	6	6	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0012	4119	6	6	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0013	4118	6	5	1	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0014	4119	5	4	1	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0015	4126	4	0	0	4	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0016	4942	2	0	0	2	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0017	4119	2	2	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0018	4140	1	0	0	1	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0019	4126	1	0	1	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0020	4126	1	1	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0021	4126	1	1	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0022	4126	1	0	0	1	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0023	4126	1	0	0	1	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0024	4126	1	0	0	1	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0025	4119	1	0	1	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0026	4119	1	0	0	1	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0027	4118	1	1	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0028	4119	1	1	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0029	4119	1	1	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0030	4119	1	0	0	0	0	1	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0031	4119	1	1	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0032	4120	1	0	1	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0033	4119	1	1	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0034	4119	1	0	0	0	0	1	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0035	4126	1	1	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0036	4118	1	1	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R4_chr7_141771674_141786691	0/0	t0037	4118	1	1	0	0	0	0	copy fasta	TAS2R4	chr7	141771674	141786691
TAS2R50_chr12_10980913_10991912	0/1	t0001	101	395	92	74	174	14	40	copy fasta	TAS2R50	chr12	10980913	10991912
TAS2R5_chr7_141785217_141796367	0/0	t0001	252	218	17	40	138	8	15	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	1/1	t0002	252	192	64	28	61	8	29	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	t0003	252	3	0	1	0	2	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	t0004	252	3	3	0	0	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	t0005	252	2	2	0	0	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	t0006	252	2	0	2	0	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	t0007	252	1	0	1	0	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R5_chr7_141785217_141796367	0/0	t0008	252	1	0	0	1	0	0	copy fasta	TAS2R5	chr7	141785217	141796367
TAS2R7_chr12_10796532_10807627	0/1	t0001	140	406	88	79	176	16	46	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R7_chr12_10796532_10807627	0/0	t0002	140	1	0	1	0	0	0	copy fasta	TAS2R7	chr12	10796532	10807627
TAS2R8_chr12_10801051_10812286	0/1	t0001	307	393	85	74	169	16	48	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	t0002	307	12	0	1	11	0	0	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R8_chr12_10801051_10812286	0/0	t0003	307	4	1	3	0	0	0	copy fasta	TAS2R8	chr12	10801051	10812286
TAS2R9_chr12_10804094_10815168	0/1	t0001	137	406	83	74	182	18	48	copy fasta	TAS2R9	chr12	10804094	10815168
TAS2R9_chr12_10804094_10815168	0/0	t0002	137	1	1	0	0	0	0	copy fasta	TAS2R9	chr12	10804094	10815168
TASL_chrX_30553809_30582766	0/1	t0001	886	269	58	38	128	12	32	copy fasta	TASL	chrX	30553809	30582766