JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TASL_chrX_30553809_30582766	1/0	t0002	886	17	1	8	6	1	0	copy fasta	TASL	chrX	30553809	30582766
TASL_chrX_30553809_30582766	0/0	t0003	887	14	8	2	3	0	1	copy fasta	TASL	chrX	30553809	30582766
TASL_chrX_30553809_30582766	0/0	t0004	886	7	6	1	0	0	0	copy fasta	TASL	chrX	30553809	30582766
TASL_chrX_30553809_30582766	0/0	t0005	886	3	0	3	0	0	0	copy fasta	TASL	chrX	30553809	30582766
TASL_chrX_30553809_30582766	0/0	t0006	885	2	0	1	1	0	0	copy fasta	TASL	chrX	30553809	30582766
TASL_chrX_30553809_30582766	0/0	t0007	886	2	2	0	0	0	0	copy fasta	TASL	chrX	30553809	30582766
TASL_chrX_30553809_30582766	0/0	t0008	886	1	0	0	1	0	0	copy fasta	TASL	chrX	30553809	30582766
TASL_chrX_30553809_30582766	0/0	t0009	886	1	1	0	0	0	0	copy fasta	TASL	chrX	30553809	30582766
TASL_chrX_30553809_30582766	0/0	t0010	886	1	0	0	1	0	0	copy fasta	TASL	chrX	30553809	30582766
TASL_chrX_30553809_30582766	0/0	t0011	886	1	0	0	0	0	1	copy fasta	TASL	chrX	30553809	30582766
TASOR2_chr10_5679838_5768740	0/0	t0001	1407	93	25	28	33	2	5	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/1	t0002	1405	89	29	17	25	7	10	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0003	1407	71	2	1	61	1	6	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0004	1405	60	10	7	32	2	9	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0005	1405	28	0	9	14	1	4	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0006	1408	12	11	0	0	0	1	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0007	1405	9	2	0	7	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0008	1405	7	0	0	7	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0009	1407	6	6	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0010	1407	3	0	0	0	0	3	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0011	1405	3	0	0	3	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0012	1407	2	0	0	2	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0013	1407	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0014	1405	1	1	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0015	1405	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0016	1408	1	0	0	0	1	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0017	1426	1	0	1	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	0/0	t0018	1405	1	0	0	1	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR2_chr10_5679838_5768740	1/0	t0019	1407	1	0	0	0	0	0	copy fasta	TASOR2	chr10	5679838	5768740
TASOR_chr3_56615132_56688265	0/1	t0001	3165	66	13	13	27	4	8	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0002	3169	37	4	9	18	1	5	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0003	3166	33	0	0	31	0	2	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0004	3182	32	0	2	23	0	7	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0005	3187	23	1	6	8	0	8	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0006	3174	18	3	1	14	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	1/0	t0007	3165	15	0	6	0	5	3	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0008	3183	14	0	1	13	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0009	3171	11	1	0	6	0	4	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0010	3166	10	5	3	2	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0011	3183	10	8	2	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0012	3181	6	6	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0013	3167	5	0	0	5	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0014	3182	5	0	0	5	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0015	3181	5	4	1	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0016	3170	4	4	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0017	3186	4	3	1	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0018	3184	4	0	0	4	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0019	3165	3	3	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0020	3165	3	3	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0021	3170	3	1	0	2	0	0	copy fasta	TASOR	chr3	56615132	56688265