JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TASOR_chr3_56615132_56688265	0/0	t0022	3176	2	1	1	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0023	3182	2	2	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0024	3182	2	2	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0025	3187	2	2	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0026	3183	2	0	0	0	0	2	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0027	3181	2	2	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0028	3181	2	0	0	1	0	1	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0029	3188	2	0	0	1	0	1	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0030	3177	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0031	3172	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0032	3173	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0033	3169	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0034	3175	1	0	0	0	0	1	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0035	3177	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0036	3166	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0037	3170	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0038	3169	1	0	0	0	1	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0039	3165	1	0	0	0	1	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0040	3166	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0041	3166	1	0	0	0	0	1	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0042	3166	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0043	3169	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0044	3168	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0045	3180	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0046	3181	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0047	3173	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0048	3171	1	0	0	0	0	1	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0049	3185	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0050	3183	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0051	3181	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0052	3183	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0053	3192	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0054	3196	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0055	3185	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0056	3182	1	0	1	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0057	3181	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0058	3182	1	0	1	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0059	3182	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0060	3182	1	0	1	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0061	3189	1	1	0	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0062	3187	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0063	3183	1	0	1	0	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASOR_chr3_56615132_56688265	0/0	t0064	3171	1	0	0	1	0	0	copy fasta	TASOR	chr3	56615132	56688265
TASP1_chr20_13384394_13643932	1/1	t0001	1080	272	73	36	121	16	24	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	t0002	1080	4	3	1	0	0	0	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	t0003	1080	3	0	0	3	0	0	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	t0004	1080	2	0	0	2	0	0	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	t0005	1080	1	1	0	0	0	0	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	t0006	1080	1	0	0	1	0	0	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	t0007	1080	1	0	1	0	0	0	copy fasta	TASP1	chr20	13384394	13643932