JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TASP1_chr20_13384394_13643932	0/0	t0008	1080	1	0	0	1	0	0	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	t0009	1080	1	0	0	1	0	0	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	t0010	1080	1	0	0	1	0	0	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	t0011	1080	1	0	0	0	0	1	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	t0012	1080	1	1	0	0	0	0	copy fasta	TASP1	chr20	13384394	13643932
TASP1_chr20_13384394_13643932	0/0	t0013	1080	1	0	0	0	0	1	copy fasta	TASP1	chr20	13384394	13643932
TATDN1_chr8_124483498_124544085	1/1	t0001	136	335	88	52	143	11	39	copy fasta	TATDN1	chr8	124483498	124544085
TATDN1_chr8_124483498_124544085	0/0	t0002	136	3	0	0	1	1	1	copy fasta	TATDN1	chr8	124483498	124544085
TATDN2_chr3_10243459_10286218	0/0	t0001	2653	140	25	15	81	0	19	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0002	2653	49	0	3	39	2	5	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/1	t0003	2653	45	8	21	4	6	5	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0004	2653	32	10	10	0	1	11	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0005	2653	23	20	3	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0006	2653	22	1	13	5	3	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0007	2653	17	15	1	1	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0008	2653	9	0	2	5	0	2	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0009	2653	4	4	0	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0010	2653	4	3	1	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0011	2653	3	0	1	0	0	2	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0012	2653	3	0	0	3	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0013	2653	2	0	0	2	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0014	2653	2	2	0	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0015	2653	1	1	0	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0016	2653	1	1	0	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0017	2653	1	1	0	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0018	2653	1	0	0	1	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0019	2653	1	0	1	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0020	2653	1	0	0	1	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0021	2653	1	1	0	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0022	2653	1	0	1	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	1/0	t0023	2652	1	0	0	0	0	0	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0024	2653	1	0	0	0	0	1	copy fasta	TATDN2	chr3	10243459	10286218
TATDN2_chr3_10243459_10286218	0/0	t0025	2653	1	0	0	0	0	1	copy fasta	TATDN2	chr3	10243459	10286218
TATDN3_chr1_212786894_212821830	0/0	t0001	1703	120	12	18	72	6	12	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/1	t0002	1703	89	0	22	55	2	9	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0003	1703	78	19	7	44	0	8	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	1/0	t0004	1703	56	36	6	0	6	7	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0005	1702	11	1	2	4	0	4	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0006	1703	6	6	0	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0007	1702	5	0	4	1	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0008	1704	5	5	0	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0009	1702	4	3	1	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0010	1703	3	2	1	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0011	1703	2	2	0	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0012	1702	1	0	0	1	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0013	1702	1	0	1	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0014	1703	1	0	0	1	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0015	1703	1	1	0	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0016	1703	1	1	0	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0017	1703	1	1	0	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830