JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TATDN3_chr1_212786894_212821830	0/0	t0018	1703	1	1	0	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0019	1704	1	0	0	1	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0020	1704	1	0	0	1	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0021	1703	1	1	0	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TATDN3_chr1_212786894_212821830	0/0	t0022	1703	1	1	0	0	0	0	copy fasta	TATDN3	chr1	212786894	212821830
TAT_chr16_71560660_71582092	0/0	t0001	2581	104	3	28	57	5	11	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0002	2581	44	0	3	30	0	11	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0003	2583	29	12	9	1	2	5	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0004	2582	20	4	11	2	0	3	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0005	2583	19	15	1	3	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0006	2581	18	0	4	8	2	4	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0007	2582	17	0	1	15	0	1	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/1	t0008	2582	14	7	2	0	1	3	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0009	2583	9	8	1	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0010	2584	8	1	3	1	1	2	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0011	2585	7	2	0	4	1	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0012	2607	7	7	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0013	2603	6	6	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0014	2581	5	5	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0015	2583	4	1	0	3	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0016	2581	4	0	0	4	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0017	2582	4	0	0	2	0	2	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0018	2595	3	3	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0019	2605	3	3	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0020	2584	3	0	2	0	1	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0021	2581	2	0	2	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0022	2580	2	1	0	1	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0023	2582	2	0	0	1	1	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0024	2586	2	0	2	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0025	2598	2	2	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0026	2593	2	1	0	0	1	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0027	2580	2	0	0	1	0	1	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0028	2581	1	0	0	1	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0029	2585	1	0	0	1	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0030	2581	1	0	1	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0031	2580	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0032	2581	1	0	0	0	0	1	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0033	2583	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0034	2594	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0035	2584	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0036	2580	1	0	1	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0037	2584	1	0	1	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0038	2584	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0039	2599	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0040	2601	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0041	2581	1	0	0	0	1	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0042	2583	1	0	1	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0043	2600	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	1/0	t0044	2581	1	0	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0045	2585	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092