Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BOD1_chr5_173602145_173621650	0/0	t0005	1369	4	4	0	0	0	0	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	t0006	1363	2	2	0	0	0	0	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	t0007	1363	2	2	0	0	0	0	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	t0008	1363	1	1	0	0	0	0	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	t0009	1374	1	0	0	1	0	0	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	t0010	1363	1	0	0	1	0	0	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	t0011	1363	1	0	1	0	0	0	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	t0012	1363	1	0	0	0	0	1	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	t0013	1363	1	0	0	0	1	0	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	t0014	1363	1	0	1	0	0	0	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	t0015	1363	1	1	0	0	0	0	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	t0016	1363	1	0	0	0	0	1	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	t0017	1363	1	0	1	0	0	0	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/0	t0018	1363	1	0	0	1	0	0	copy fasta	BOD1	chr5	173602145	173621650
BOD1_chr5_173602145_173621650	0/1	t0019	1363	1	0	0	0	0	0	copy fasta	BOD1	chr5	173602145	173621650
BOK_chr2_241553745_241579131	0/1	t0001	2028	140	45	22	59	5	8	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0002	2028	82	7	11	51	0	13	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	1/0	t0003	1988	28	2	14	3	4	4	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0004	1977	27	0	10	12	1	4	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0005	1988	22	0	2	19	0	1	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0006	1908	18	2	2	9	0	5	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0007	2028	14	5	0	9	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0008	1988	7	0	0	7	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0009	1908	7	2	5	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0010	2028	6	0	1	5	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0011	1988	6	0	0	4	2	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0012	1866	5	5	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0013	2017	5	0	1	1	1	2	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0014	2028	4	0	0	4	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0015	2028	4	0	0	4	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0016	2029	4	2	1	1	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0017	1976	4	0	0	0	0	4	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0018	2017	4	3	1	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0019	1988	3	3	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0020	2028	3	0	2	0	1	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0021	2028	3	3	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0022	1908	3	3	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0023	1987	2	0	0	2	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0024	2028	2	0	0	0	0	2	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0025	1908	2	1	1	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0026	2028	2	0	1	0	0	1	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0027	1989	2	2	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0028	2109	2	0	0	0	2	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0029	2028	2	2	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0030	2028	1	0	1	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0031	1987	1	0	0	0	0	1	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0032	2028	1	1	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0033	2028	1	1	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0034	2027	1	0	0	1	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0035	2028	1	0	0	0	0	1	copy fasta	BOK	chr2	241553745	241579131