JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TAT_chr16_71560660_71582092	0/0	t0046	2584	1	0	0	1	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0047	2584	1	0	0	1	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0048	2580	1	0	0	1	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0049	2583	1	0	0	1	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0050	2581	1	0	0	1	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0051	2583	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0052	2585	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0053	2584	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0054	2601	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0055	2603	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0056	2606	1	1	0	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAT_chr16_71560660_71582092	0/0	t0057	2584	1	0	1	0	0	0	copy fasta	TAT	chr16	71560660	71582092
TAX1BP1_chr7_27735162_27834767	1/1	t0001	1054	220	48	30	115	7	18	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	t0002	1055	98	27	17	36	6	12	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	t0003	1054	12	0	5	7	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	t0004	1055	9	0	6	0	1	2	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	t0005	1055	4	0	2	0	0	2	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	t0006	1054	4	3	1	0	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	t0007	1054	3	1	2	0	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	t0008	1052	3	2	1	0	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	t0009	1054	3	3	0	0	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	t0010	1054	3	3	0	0	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	t0011	1055	2	2	0	0	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP1_chr7_27735162_27834767	0/0	t0012	1055	1	1	0	0	0	0	copy fasta	TAX1BP1	chr7	27735162	27834767
TAX1BP3_chr17_3657895_3673578	0/0	t0001	906	141	47	29	41	6	18	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/1	t0002	906	134	6	25	78	5	19	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0003	906	71	15	8	39	2	7	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	1/0	t0004	906	19	0	1	16	0	1	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0005	906	10	5	3	0	1	1	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0006	906	5	0	5	0	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0007	906	4	0	0	4	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0008	906	4	1	1	0	0	2	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0009	906	3	3	0	0	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0010	906	2	0	2	0	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0011	906	1	0	0	0	0	1	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0012	906	1	0	0	1	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0013	906	1	0	1	0	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0014	906	1	0	1	0	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0015	906	1	0	0	0	0	1	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0016	906	1	0	0	1	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0017	906	1	0	0	1	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0018	906	1	0	0	1	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0019	906	1	0	0	1	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0020	906	1	1	0	0	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0021	906	1	1	0	0	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0022	906	1	0	0	1	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0023	906	1	1	0	0	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0024	906	1	1	0	0	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TAX1BP3_chr17_3657895_3673578	0/0	t0025	906	1	1	0	0	0	0	copy fasta	TAX1BP3	chr17	3657895	3673578
TBATA_chr10_70766238_70790377	1/1	t0001	505	397	84	73	178	12	48	copy fasta	TBATA	chr10	70766238	70790377