JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBATA_chr10_70766238_70790377	0/0	t0002	505	13	10	3	0	0	0	copy fasta	TBATA	chr10	70766238	70790377
TBC1D10A_chr22_30286990_30331941	1/1	t0001	446	362	68	74	158	18	42	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	t0002	446	11	10	1	0	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	t0003	446	8	8	0	0	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	t0004	446	4	3	1	0	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	t0005	467	2	0	0	2	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10A_chr22_30286990_30331941	0/0	t0006	446	1	1	0	0	0	0	copy fasta	TBC1D10A	chr22	30286990	30331941
TBC1D10B_chr16_30352102_30375494	1/1	t0001	1154	257	54	58	95	10	38	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	t0002	1154	26	24	2	0	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	t0003	1154	15	0	11	0	3	1	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	t0004	1154	3	3	0	0	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	t0005	1154	2	0	2	0	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	t0006	1154	2	0	0	2	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	t0007	1154	1	1	0	0	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	t0008	1154	1	0	1	0	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	t0009	1154	1	0	0	0	1	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	t0010	1154	1	1	0	0	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	t0011	1154	1	0	0	1	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	t0012	1154	1	0	0	0	0	1	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10B_chr16_30352102_30375494	0/0	t0013	1154	1	1	0	0	0	0	copy fasta	TBC1D10B	chr16	30352102	30375494
TBC1D10C_chr11_67399083_67415089	0/1	t0001	456	363	93	73	153	13	30	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	t0002	456	4	0	1	0	1	2	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	t0003	456	3	3	0	0	0	0	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	1/0	t0004	456	1	0	0	0	0	0	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D10C_chr11_67399083_67415089	0/0	t0005	456	1	0	0	1	0	0	copy fasta	TBC1D10C	chr11	67399083	67415089
TBC1D12_chr10_94397541_94541332	0/0	t0001	3310	167	32	20	89	7	19	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	1/1	t0002	3310	85	11	25	32	7	8	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0003	3310	34	17	9	2	0	6	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0004	3310	12	0	0	10	0	2	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0005	3310	11	11	0	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0006	3310	7	0	1	3	1	2	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0007	3310	5	0	2	0	2	1	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0008	3310	3	3	0	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0009	3310	2	2	0	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0010	3310	2	0	0	0	0	2	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0011	3310	2	2	0	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0012	3310	2	2	0	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0013	3310	1	1	0	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0014	3310	1	0	0	1	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0015	3310	1	0	0	1	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0016	3310	1	0	0	0	0	1	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0017	3310	1	0	0	1	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0018	3310	1	0	0	1	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0019	3310	1	1	0	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0020	3310	1	1	0	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0021	3310	1	0	1	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0022	3310	1	1	0	0	0	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0023	3310	1	0	0	0	1	0	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0024	3310	1	0	0	0	0	1	copy fasta	TBC1D12	chr10	94397541	94541332
TBC1D12_chr10_94397541_94541332	0/0	t0025	3310	1	0	0	0	0	1	copy fasta	TBC1D12	chr10	94397541	94541332