JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	tseq	genename	chr	start	end
TBC1D13_chr9_128782253_128815430	0/0	t0050	2671	2	0	0	2	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0051	2671	2	2	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0052	2659	2	2	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0053	2655	2	1	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0054	2639	2	2	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0055	2688	2	0	1	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0056	2672	2	1	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0057	2666	2	0	0	2	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0058	2664	2	2	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0059	2665	2	2	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0060	2661	2	2	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0061	2651	2	2	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0062	2672	2	2	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0063	2657	2	0	0	0	2	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0064	2637	1	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0065	2641	1	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0066	2695	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0067	2689	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0068	2683	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0069	2681	1	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0070	2679	1	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0071	2673	1	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0072	2665	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0073	2665	1	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0074	2663	1	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0075	2661	1	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0076	2659	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0077	2659	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0078	2659	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0079	2657	1	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0080	2657	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0081	2657	1	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0082	2655	1	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0083	2655	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0084	2653	1	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0085	2653	1	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0086	2651	1	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0087	2649	1	0	0	0	1	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0088	2659	1	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0089	2655	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0090	2674	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0091	2720	1	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0092	2666	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0093	2664	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0094	2664	1	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0095	2660	1	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0096	2640	1	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0097	2673	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0098	2669	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0099	2665	1	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430