JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D13_chr9_128782253_128815430	0/0	t0100	2663	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0101	2663	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0102	2661	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0103	2659	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0104	2655	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0105	2651	1	0	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0106	2637	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0107	2677	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0108	2665	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0109	2663	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0110	2658	1	0	0	0	0	1	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0111	2656	1	0	0	0	0	1	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0112	2695	1	0	0	0	0	1	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0113	2677	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0114	2675	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0115	2669	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0116	2667	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0117	2665	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0118	2661	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0119	2661	1	0	0	0	0	1	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0120	2655	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0121	2651	1	0	0	0	0	1	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0122	2653	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0123	2667	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0124	2665	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0125	2659	1	0	0	0	0	1	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0126	2667	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0127	2661	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0128	2653	1	0	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0129	2655	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0130	2671	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0131	2678	1	0	0	0	0	1	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0132	2724	1	0	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0133	2664	1	0	0	0	0	1	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0134	2662	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0135	2658	1	0	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0136	2656	1	0	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0137	2672	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0138	2682	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0139	2663	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0140	2659	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0141	2655	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0142	2655	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0143	2653	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0144	2653	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0145	2653	1	0	0	0	0	1	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0146	2669	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0147	2663	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0148	2744	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0149	2736	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430