JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D13_chr9_128782253_128815430	0/0	t0150	2704	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0151	2698	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0152	2686	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0153	2670	1	1	0	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0154	2658	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0155	2658	1	0	0	0	0	1	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0156	2654	1	0	1	0	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0157	2653	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0158	2658	1	0	0	0	0	1	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0159	2656	1	0	0	0	0	1	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0160	2655	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0161	2651	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0162	2649	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0163	2659	1	0	0	0	1	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0164	2652	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0165	2707	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D13_chr9_128782253_128815430	0/0	t0166	2705	1	0	0	1	0	0	copy fasta	TBC1D13	chr9	128782253	128815430
TBC1D14_chr4_6904826_7038114	0/1	t0001	2866	102	17	20	49	3	12	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0002	2866	92	21	19	38	3	11	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0003	2866	35	28	4	0	3	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	1/0	t0004	2866	14	3	5	0	1	4	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0005	2866	13	12	0	1	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0006	2866	6	0	3	3	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0007	2866	6	0	0	6	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0008	2866	5	4	1	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0009	2866	3	1	0	0	0	2	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0010	2866	3	0	1	1	0	1	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0011	2866	3	2	1	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0012	2866	2	2	0	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0013	2866	2	0	0	2	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0014	2866	1	0	0	1	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0015	2866	1	0	0	0	0	1	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0016	2866	1	0	0	0	0	1	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0017	2866	1	0	0	1	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0018	2866	1	1	0	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0019	2866	1	0	1	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0020	2866	1	1	0	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0021	2866	1	0	0	1	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0022	2866	1	1	0	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0023	2866	1	0	1	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0024	2866	1	0	1	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0025	2866	1	1	0	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0026	2866	1	0	0	1	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0027	2866	1	1	0	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0028	2866	1	0	1	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0029	2866	1	1	0	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0030	2866	1	0	1	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D14_chr4_6904826_7038114	0/0	t0031	2866	1	0	1	0	0	0	copy fasta	TBC1D14	chr4	6904826	7038114
TBC1D15_chr12_71834759_71929313	1/1	t0001	1133	158	25	27	79	7	18	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	t0002	1133	155	36	26	86	3	4	copy fasta	TBC1D15	chr12	71834759	71929313