JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D15_chr12_71834759_71929313	0/0	t0003	1133	30	11	5	3	2	9	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	t0004	1133	13	13	0	0	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	t0005	1133	1	1	0	0	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	t0006	1133	1	1	0	0	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	t0007	1133	1	1	0	0	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	t0008	1133	1	1	0	0	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	t0009	1133	1	1	0	0	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	t0010	1133	1	0	0	0	0	1	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	t0011	1133	1	0	0	1	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D15_chr12_71834759_71929313	0/0	t0012	1133	1	0	0	1	0	0	copy fasta	TBC1D15	chr12	71834759	71929313
TBC1D16_chr17_79927343_80040872	0/0	t0001	8707	35	2	6	21	1	5	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0002	8657	14	7	0	3	1	3	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/1	t0003	8661	14	0	4	5	1	3	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0004	8653	13	0	3	3	0	7	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0005	8709	12	0	1	11	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0006	8663	8	0	1	3	1	3	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0007	8669	8	7	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0008	8709	7	7	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0009	8655	7	4	0	1	2	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0010	8665	6	0	1	3	2	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0011	8661	6	0	0	6	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0012	8659	6	3	1	0	0	2	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0013	8663	6	4	2	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0014	8711	5	0	0	5	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0015	8707	5	1	3	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0016	8660	5	0	0	5	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0017	8707	4	1	3	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0018	8661	4	0	4	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0019	8661	4	0	0	4	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0020	8663	3	0	0	0	1	2	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0021	8663	3	0	0	3	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0022	8667	3	0	1	1	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0023	8661	3	0	0	3	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0024	8661	3	0	0	3	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0025	8657	3	0	2	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0026	8713	3	3	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0027	8657	3	0	0	3	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0028	8667	3	0	0	2	1	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0029	8649	3	3	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0030	8656	2	0	0	0	1	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0031	8707	2	0	2	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0032	8703	2	0	0	2	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0033	8707	2	0	0	2	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0034	8663	2	0	2	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0035	8657	2	0	1	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0036	8663	2	2	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0037	8663	2	0	0	2	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0038	8659	2	0	0	1	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0039	8661	2	2	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0040	8659	2	2	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872