JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D16_chr17_79927343_80040872	0/0	t0041	8659	2	1	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0042	8659	2	0	0	2	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0043	8659	2	0	2	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0044	8665	2	2	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0045	8665	2	0	1	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0046	8663	2	0	1	0	1	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0047	8665	2	0	2	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0048	8663	2	2	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0049	8669	2	0	0	2	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0050	8667	2	2	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0051	8667	2	2	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0052	8659	2	0	0	2	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0053	8707	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0054	8659	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0055	8660	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0056	8660	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0057	8660	1	0	0	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0058	8707	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0059	8727	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0060	8709	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0061	8709	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0062	8707	1	0	0	0	1	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0063	8707	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0064	8707	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0065	8707	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0066	8695	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0067	8707	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0068	8707	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0069	8703	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0070	8665	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0071	8669	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0072	8669	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0073	8661	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0074	8660	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0075	8661	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0076	8659	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0077	8659	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0078	8653	1	0	0	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0079	8663	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0080	8655	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0081	8661	1	0	0	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0082	8655	1	0	0	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0083	8641	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0084	8641	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0085	8661	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0086	8667	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0087	8657	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0088	8657	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0089	8664	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0090	8665	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872