JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D16_chr17_79927343_80040872	0/0	t0091	8662	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0092	8661	1	0	0	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0093	8661	1	0	0	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0094	8707	1	0	0	0	1	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0095	8705	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0096	8715	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0097	8661	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0098	8663	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0099	8659	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0100	8657	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0101	8657	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0102	8709	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0103	8705	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0104	8657	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	1/0	t0105	8657	1	0	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0106	8653	1	0	0	0	1	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0107	8659	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0108	8667	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0109	8657	1	0	0	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0110	8709	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0111	8661	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0112	8699	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0113	8709	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0114	8667	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0115	8665	1	0	0	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0116	8661	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0117	8657	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0118	8653	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0119	8653	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0120	8649	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0121	8665	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0122	8661	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0123	8663	1	0	0	0	1	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0124	8671	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0125	8669	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0126	8671	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0127	8669	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0128	8653	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0129	8665	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0130	8665	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0131	8661	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0132	8661	1	0	0	0	0	1	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0133	8661	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0134	8657	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0135	8657	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0136	8659	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0137	8667	1	0	1	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0138	8659	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0139	8657	1	0	0	1	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D16_chr17_79927343_80040872	0/0	t0140	8641	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872