JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D16_chr17_79927343_80040872	0/0	t0141	8663	1	1	0	0	0	0	copy fasta	TBC1D16	chr17	79927343	80040872
TBC1D17_chr19_49872702_49893750	1/1	t0001	149	419	94	72	196	12	43	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D17_chr19_49872702_49893750	0/0	t0002	149	1	0	0	0	0	1	copy fasta	TBC1D17	chr19	49872702	49893750
TBC1D19_chr4_26579084_26761223	1/1	t0001	1387	180	58	26	74	6	14	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	t0002	1387	107	19	17	51	6	14	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	t0003	1387	8	7	1	0	0	0	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	t0004	1387	4	0	0	4	0	0	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	t0005	1387	3	3	0	0	0	0	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	t0006	1387	2	0	0	0	0	2	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	t0007	1387	2	0	0	2	0	0	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	t0008	1387	2	2	0	0	0	0	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	t0009	1387	1	1	0	0	0	0	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D19_chr4_26579084_26761223	0/0	t0010	1387	1	0	0	1	0	0	copy fasta	TBC1D19	chr4	26579084	26761223
TBC1D1_chr4_37886084_38144173	1/1	t0001	2197	51	16	11	6	5	11	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0002	2197	33	10	11	7	0	5	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0003	2196	27	2	8	9	1	7	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0004	2196	23	0	6	15	0	2	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0005	2196	23	0	5	11	2	5	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0006	2196	15	1	0	13	0	1	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0007	2197	13	1	2	10	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0008	2196	11	0	2	5	0	4	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0009	2197	10	10	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0010	2197	8	2	0	6	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0011	2196	8	4	0	2	0	2	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0012	2196	7	0	3	4	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0013	2196	7	0	0	7	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0014	2196	7	1	0	6	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0015	2195	7	7	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0016	2196	6	1	1	3	0	1	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0017	2196	6	0	0	6	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0018	2195	6	2	4	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0019	2195	5	4	1	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0020	2197	5	2	3	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0021	2196	3	0	0	3	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0022	2195	3	2	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0023	2197	2	2	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0024	2197	2	0	0	2	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0025	2195	2	0	0	2	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0026	2196	2	2	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0027	2197	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0028	2197	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0029	2195	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0030	2195	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0031	2196	1	0	1	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0032	2197	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0033	2197	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0034	2197	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0035	2196	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0036	2197	1	0	1	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0037	2197	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173