Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BOK_chr2_241553745_241579131	0/0	t0036	1907	1	0	0	1	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0037	2189	1	0	0	1	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0038	2068	1	0	0	1	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0039	2028	1	0	0	0	0	1	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0040	1988	1	0	0	1	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0041	1908	1	0	0	0	0	1	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0042	2028	1	1	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0043	2028	1	0	0	1	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0044	1988	1	1	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0045	1825	1	1	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0046	1895	1	0	1	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0047	1977	1	0	1	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0048	1855	1	1	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0049	1897	1	1	0	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOK_chr2_241553745_241579131	0/0	t0050	2017	1	0	1	0	0	0	copy fasta	BOK	chr2	241553745	241579131
BOLA1_chr1_149894568_149905795	1/1	t0001	478	351	89	70	126	14	50	copy fasta	BOLA1	chr1	149894568	149905795
BOLA1_chr1_149894568_149905795	0/0	t0002	478	7	7	0	0	0	0	copy fasta	BOLA1	chr1	149894568	149905795
BOLA1_chr1_149894568_149905795	0/0	t0003	478	1	1	0	0	0	0	copy fasta	BOLA1	chr1	149894568	149905795
BOLA1_chr1_149894568_149905795	0/0	t0004	478	1	1	0	0	0	0	copy fasta	BOLA1	chr1	149894568	149905795
BOLA2B_chr16_30187932_30198666	0/0	t0001	115	251	62	48	103	14	24	copy fasta	BOLA2B	chr16	30187932	30198666
BOLA2B_chr16_30187932_30198666	0/0	t0002	115	3	0	2	1	0	0	copy fasta	BOLA2B	chr16	30187932	30198666
BOLA2_chr16_29448593_29459351	0/0	t0001	139	172	30	15	103	6	18	copy fasta	BOLA2	chr16	29448593	29459351
BOLA2_chr16_29448593_29459351	0/0	t0002	139	2	0	1	1	0	0	copy fasta	BOLA2	chr16	29448593	29459351
BOLA3_chr2_74130400_74152912	0/0	t0001	232	434	98	82	200	12	42	copy fasta	BOLA3	chr2	74130400	74152912
BOLL_chr2_197721890_197790319	1/0	t0001	1945	238	46	52	111	7	21	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/1	t0002	1945	56	5	9	36	3	2	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	t0003	1945	5	5	0	0	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	t0004	1945	5	5	0	0	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	t0005	1945	5	1	3	0	0	1	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	t0006	1945	4	2	0	2	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	t0007	1945	4	4	0	0	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	t0008	1945	3	3	0	0	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	t0009	1945	2	2	0	0	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	t0010	1945	1	1	0	0	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	t0011	1945	1	1	0	0	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	t0012	1945	1	0	1	0	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	t0013	1945	1	0	0	1	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	t0014	1945	1	0	1	0	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOLL_chr2_197721890_197790319	0/0	t0015	1945	1	1	0	0	0	0	copy fasta	BOLL	chr2	197721890	197790319
BOP1_chr8_144257045_144296438	1/1	t0001	188	397	98	78	156	18	45	copy fasta	BOP1	chr8	144257045	144296438
BOP1_chr8_144257045_144296438	0/0	t0002	188	1	0	0	0	0	1	copy fasta	BOP1	chr8	144257045	144296438
BORA_chr13_72722923_72761196	0/1	t0001	1105	273	71	36	120	12	33	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	1/0	t0002	1081	97	20	20	42	6	8	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	t0003	1105	5	0	1	4	0	0	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	t0004	1105	3	1	2	0	0	0	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	t0005	1105	3	2	1	0	0	0	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	t0006	1105	2	0	2	0	0	0	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	t0007	1105	1	0	0	1	0	0	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	t0008	1105	1	0	0	0	0	1	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	t0009	1105	1	1	0	0	0	0	copy fasta	BORA	chr13	72722923	72761196