JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D1_chr4_37886084_38144173	0/0	t0038	2197	1	0	0	1	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0039	2196	1	0	1	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0040	2196	1	0	0	0	0	1	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0041	2195	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0042	2196	1	0	0	0	0	1	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0043	2197	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D1_chr4_37886084_38144173	0/0	t0044	2196	1	1	0	0	0	0	copy fasta	TBC1D1	chr4	37886084	38144173
TBC1D20_chr20_430480_467533	0/0	t0001	3235	123	19	33	43	6	22	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	1/0	t0002	3235	53	11	5	31	0	5	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0003	3235	51	4	16	21	5	5	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/1	t0004	3235	45	7	3	29	2	3	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0005	3235	22	11	1	10	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0006	3235	22	0	9	13	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0007	3235	17	10	3	3	1	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0008	3235	7	0	0	7	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0009	3235	6	5	1	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0010	3235	5	0	1	0	0	4	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0011	3235	5	4	1	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0012	3235	4	1	0	3	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0013	3235	3	3	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0014	3235	3	3	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0015	3235	2	2	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0016	3235	2	0	0	2	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0017	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0018	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0019	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0020	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0021	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0022	3235	1	0	1	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0023	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0024	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0025	3235	1	0	1	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0026	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0027	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0028	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0029	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0030	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0031	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0032	3235	1	0	0	1	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0033	3235	1	0	0	1	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0034	3235	1	0	0	0	0	1	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0035	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0036	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0037	3235	1	0	0	0	0	1	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0038	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0039	3235	1	0	0	1	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0040	3235	1	0	0	1	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0041	3235	1	0	0	1	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0042	3235	1	0	0	1	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0043	3235	1	0	0	0	0	1	copy fasta	TBC1D20	chr20	430480	467533